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Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

The Wheat@URGI portal has been developed to provide the international community of researchers and breeders with access to the bread wheat reference genome sequence produced by the International Wheat Genome Sequencing Consortium. Genome browsers, BLAST, and InterMine tools have been established for...

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Autores principales: Alaux, Michael, Rogers, Jane, Letellier, Thomas, Flores, Raphaël, Alfama, Françoise, Pommier, Cyril, Mohellibi, Nacer, Durand, Sophie, Kimmel, Erik, Michotey, Célia, Guerche, Claire, Loaec, Mikaël, Lainé, Mathilde, Steinbach, Delphine, Choulet, Frédéric, Rimbert, Hélène, Leroy, Philippe, Guilhot, Nicolas, Salse, Jérôme, Feuillet, Catherine, Paux, Etienne, Eversole, Kellye, Adam-Blondon, Anne-Françoise, Quesneville, Hadi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6097284/
https://www.ncbi.nlm.nih.gov/pubmed/30115101
http://dx.doi.org/10.1186/s13059-018-1491-4
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author Alaux, Michael
Rogers, Jane
Letellier, Thomas
Flores, Raphaël
Alfama, Françoise
Pommier, Cyril
Mohellibi, Nacer
Durand, Sophie
Kimmel, Erik
Michotey, Célia
Guerche, Claire
Loaec, Mikaël
Lainé, Mathilde
Steinbach, Delphine
Choulet, Frédéric
Rimbert, Hélène
Leroy, Philippe
Guilhot, Nicolas
Salse, Jérôme
Feuillet, Catherine
Paux, Etienne
Eversole, Kellye
Adam-Blondon, Anne-Françoise
Quesneville, Hadi
author_facet Alaux, Michael
Rogers, Jane
Letellier, Thomas
Flores, Raphaël
Alfama, Françoise
Pommier, Cyril
Mohellibi, Nacer
Durand, Sophie
Kimmel, Erik
Michotey, Célia
Guerche, Claire
Loaec, Mikaël
Lainé, Mathilde
Steinbach, Delphine
Choulet, Frédéric
Rimbert, Hélène
Leroy, Philippe
Guilhot, Nicolas
Salse, Jérôme
Feuillet, Catherine
Paux, Etienne
Eversole, Kellye
Adam-Blondon, Anne-Françoise
Quesneville, Hadi
author_sort Alaux, Michael
collection PubMed
description The Wheat@URGI portal has been developed to provide the international community of researchers and breeders with access to the bread wheat reference genome sequence produced by the International Wheat Genome Sequencing Consortium. Genome browsers, BLAST, and InterMine tools have been established for in-depth exploration of the genome sequence together with additional linked datasets including physical maps, sequence variations, gene expression, and genetic and phenomic data from other international collaborative projects already stored in the GnpIS information system. The portal provides enhanced search and browser features that will facilitate the deployment of the latest genomics resources in wheat improvement. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13059-018-1491-4) contains supplementary material, which is available to authorized users.
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spelling pubmed-60972842018-08-20 Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data Alaux, Michael Rogers, Jane Letellier, Thomas Flores, Raphaël Alfama, Françoise Pommier, Cyril Mohellibi, Nacer Durand, Sophie Kimmel, Erik Michotey, Célia Guerche, Claire Loaec, Mikaël Lainé, Mathilde Steinbach, Delphine Choulet, Frédéric Rimbert, Hélène Leroy, Philippe Guilhot, Nicolas Salse, Jérôme Feuillet, Catherine Paux, Etienne Eversole, Kellye Adam-Blondon, Anne-Françoise Quesneville, Hadi Genome Biol Database The Wheat@URGI portal has been developed to provide the international community of researchers and breeders with access to the bread wheat reference genome sequence produced by the International Wheat Genome Sequencing Consortium. Genome browsers, BLAST, and InterMine tools have been established for in-depth exploration of the genome sequence together with additional linked datasets including physical maps, sequence variations, gene expression, and genetic and phenomic data from other international collaborative projects already stored in the GnpIS information system. The portal provides enhanced search and browser features that will facilitate the deployment of the latest genomics resources in wheat improvement. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13059-018-1491-4) contains supplementary material, which is available to authorized users. BioMed Central 2018-08-17 /pmc/articles/PMC6097284/ /pubmed/30115101 http://dx.doi.org/10.1186/s13059-018-1491-4 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Database
Alaux, Michael
Rogers, Jane
Letellier, Thomas
Flores, Raphaël
Alfama, Françoise
Pommier, Cyril
Mohellibi, Nacer
Durand, Sophie
Kimmel, Erik
Michotey, Célia
Guerche, Claire
Loaec, Mikaël
Lainé, Mathilde
Steinbach, Delphine
Choulet, Frédéric
Rimbert, Hélène
Leroy, Philippe
Guilhot, Nicolas
Salse, Jérôme
Feuillet, Catherine
Paux, Etienne
Eversole, Kellye
Adam-Blondon, Anne-Françoise
Quesneville, Hadi
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data
title Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data
title_full Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data
title_fullStr Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data
title_full_unstemmed Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data
title_short Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data
title_sort linking the international wheat genome sequencing consortium bread wheat reference genome sequence to wheat genetic and phenomic data
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6097284/
https://www.ncbi.nlm.nih.gov/pubmed/30115101
http://dx.doi.org/10.1186/s13059-018-1491-4
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