Cargando…

Simulations of lipid bilayers using the CHARMM36 force field with the TIP3P-FB and TIP4P-FB water models

The CHARMM36 force field for lipids is widely used in simulations of lipid bilayers. The CHARMM family of force fields were developed for use with the mTIP3P water model. This water model has an anomalously high dielectric constant and low viscosity, which limits its accuracy in the calculation of q...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sajadi, Fatima, Rowley, Christopher N.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	PeerJ Inc. 2018
Materias:	Biochemistry
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6097494/ https://www.ncbi.nlm.nih.gov/pubmed/30128211 http://dx.doi.org/10.7717/peerj.5472

Ejemplares similares

Optimized Magnesium Force Field Parameters for Biomolecular Simulations with Accurate Solvation, Ion-Binding, and Water-Exchange Properties in SPC/E, TIP3P-fb, TIP4P/2005, TIP4P-Ew, and TIP4P-D
por: Grotz, Kara K., et al.
Publicado: (2021)

CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field
por: Lee, Jumin, et al.
Publicado: (2015)

charmm2gmx: An Automated Method to Port the CHARMM Additive Force Field to GROMACS
por: Wacha, András F., et al.
Publicado: (2023)

Data analysis of molecular dynamics simulation trajectories of β-sitosterol, sonidegib and cholesterol in smoothened protein with the CHARMM36 force field
por: Che Omar, Mohammad Tasyriq
Publicado: (2020)

Additive CHARMM force field for naturally occurring modified ribonucleotides
por: Xu, You, et al.
Publicado: (2016)

Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol
por: Campomanes, Pablo, et al.
Publicado: (2021)

CHARMM-GUI PACE CG Builder for Solution, Micelle, and Bilayer Coarse-Grained Simulations
por: Qi, Yifei, et al.
Publicado: (2014)

Search for di-Higgs production with 36 fb^{-1} of data
por: Petit, Elisabeth
Publicado: (2018)

Benchmarking Adaptive Steered Molecular Dynamics (ASMD) on CHARMM Force Fields
por: Allen, Caley, et al.
Publicado: (2022)

FB Muon Chamber
Publicado: (1995)

FB Muon Chamber
Publicado: (1994)

$A_{FB}$ at LHC
por: Liles, M, et al.
Publicado: (2011)

Extending the Stochastic Titration CpHMD to CHARMM36m
por: Sequeira, João G. N., et al.
Publicado: (2022)

CHARMM Force Field Parameterization of Peroxisome Proliferator-Activated Receptor γ Ligands
por: Mottin, Melina, et al.
Publicado: (2016)

Validating the CHARMM36m protein force field with LJ-PME reveals altered hydrogen bonding dynamics under elevated pressures
por: Xu, You, et al.
Publicado: (2021)

Experiment and Physics Prospects at ATLAS and CMS – 1fb^-1, 10 fb^-1, ...
por: CLARK, A
Publicado: (2010)

Electroweak interference at LEP: measurements of A$_{FB}^{b}$ and A$_{FB}^{c}$ at LEP
por: Rosier-Lees, S
Publicado: (1994)

In Vitro Reconstitution of Self-Organizing Protein Patterns on Supported Lipid Bilayers
por: Ramm, Beatrice, et al.
Publicado: (2018)

A_FB met LHC
por: Aguilar Saavedra, Juan Antonio
Publicado: (2011)

Precision FB asymmetries at the Z
por: ten Have, I
Publicado: (1991)

The dimerization equilibrium of a ClC Cl(−)/H(+) antiporter in lipid bilayers
por: Chadda, Rahul, et al.
Publicado: (2016)

Material for the CMS monojet analysis for 101+36/fb (PAS-EXO-20-004)
por: Albert, Andreas
Publicado: (2021)

Efficient Quantification of Lipid Packing Defect Sensing by Amphipathic Peptides: Comparing Martini 2 and 3 with CHARMM36
por: van Hilten, Niek, et al.
Publicado: (2022)

Influence of alternating temperature preculture on cryopreservation results for potato shoot tips
por: Kaczmarczyk, Anja, et al.
Publicado: (2008)

QCD corrections to A^b\barb_FB and A^c\barc_FB measurements at LEP1
por: The LEP Heavy Flavor Working Group
Publicado: (1997)

FB Muon Chamber L3
Publicado: (1995)

Prospects for physics with 1/fb at CMS
por: Teyssier, Daniel Francois
Publicado: (2010)

LHC: Physics with 1 fb-1
por: McPherson, R A
Publicado: (2006)

Membranes linked by trans-SNARE complexes require lipids prone to non-bilayer structure for progression to fusion
por: Zick, Michael, et al.
Publicado: (2014)

Structures, dynamics, and hydrogen-bond interactions of antifreeze proteins in TIP4P/Ice water and their dependence on force fields
por: Lee, Hwankyu
Publicado: (2018)

Correction: Membranes linked by trans-SNARE complexes require lipids prone to non-bilayer structure for progression to fusion
por: Zick, Michael, et al.
Publicado: (2015)

Modified Protein-Water Interactions in CHARMM36m for Thermodynamics and Kinetics of Proteins in Dilute and Crowded Solutions
por: Matsubara, Daiki, et al.
Publicado: (2022)

Extrapolation of $E_{\rm T}^{miss}$+ jet search results to an integrated luminosity of 300 fb$^{-1}$ and 3000 fb$^{-1}$
por: The ATLAS collaboration
Publicado: (2018)

CHARMM-GUI Membrane Builder for Lipid Nanoparticles with Ionizable Cationic Lipids and PEGylated Lipids
por: Park, Soohyung, et al.
Publicado: (2021)

Supersymmetry in Light of 1/fb of LHC Data
por: Buchmueller, O., et al.
Publicado: (2011)

Measurements of $R_{b}$, $A_{FB}^{b}$ and $A_{FB}^{c}$ in $e^{+}e^{-}$ Collisions at 130-189 GeV
por: Abbiendi, G., et al.
Publicado: (2000)

Aggregation of Lipid-Anchored Full-Length H-Ras in Lipid Bilayers: Simulations with the MARTINI Force Field
por: Li, Hualin, et al.
Publicado: (2013)

Elucidation of Shearing Mechanism of Finish-type FB and Extrusion-type FB for Thin Foil of JIS SUS304 by Numerical and EBSD Analyses
por: Suzuki, Yohei, et al.
Publicado: (2019)

Measuring the force of the tip of the elephants trunk
por: Cornette, Raphaël, et al.
Publicado: (2022)

CHARMM-GUI Multicomponent Assembler for Modeling and Simulation of Complex Multicomponent Systems
por: Kern, Nathan R., et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_7f2lmqfrglcq559j43n2tfenu3