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Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach

Nowadays, quantitative structure–activity relationship (QSAR) methods have been widely performed to predict the toxicity of compounds to organisms due to their simplicity, ease of implementation, and low hazards. In this study, to estimate the toxicities of substituted aromatic compounds to Tetrahym...

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Autores principales: Luan, Feng, Wang, Ting, Tang, Lili, Zhang, Shuang, Cordeiro, M. Natália Dias Soeiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6099972/
https://www.ncbi.nlm.nih.gov/pubmed/29695132
http://dx.doi.org/10.3390/molecules23051002
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author Luan, Feng
Wang, Ting
Tang, Lili
Zhang, Shuang
Cordeiro, M. Natália Dias Soeiro
author_facet Luan, Feng
Wang, Ting
Tang, Lili
Zhang, Shuang
Cordeiro, M. Natália Dias Soeiro
author_sort Luan, Feng
collection PubMed
description Nowadays, quantitative structure–activity relationship (QSAR) methods have been widely performed to predict the toxicity of compounds to organisms due to their simplicity, ease of implementation, and low hazards. In this study, to estimate the toxicities of substituted aromatic compounds to Tetrahymena pyriformis, the QSAR models were established by the multiple linear regression (MLR) and radial basis function neural network (RBFNN). Unlike other QSAR studies, according to the difference of functional groups (−NO(2), −X), the whole dataset was divided into three groups and further modeled separately. The statistical characteristics for the models are obtained as the following: MLR: n = 36, R(2) = 0.829, RMS (root mean square) = 0.192, RBFNN: n = 36, R(2) = 0.843, RMS = 0.167 for Group 1; MLR: n = 60, R(2) = 0.803, RMS = 0.222, RBFNN: n = 60, R(2) = 0.821, RMS = 0.193 for Group 2; MLR: n = 31 R(2) = 0.852, RMS = 0.192; RBFNN: n = 31, R(2) = 0.885, RMS = 0.163 for Group 3, respectively. The results were within the acceptable range, and the models were found to be statistically robust with high external predictivity. Moreover, the models also gave some insight on those characteristics of the structures that most affect the toxicity.
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spelling pubmed-60999722018-11-13 Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach Luan, Feng Wang, Ting Tang, Lili Zhang, Shuang Cordeiro, M. Natália Dias Soeiro Molecules Article Nowadays, quantitative structure–activity relationship (QSAR) methods have been widely performed to predict the toxicity of compounds to organisms due to their simplicity, ease of implementation, and low hazards. In this study, to estimate the toxicities of substituted aromatic compounds to Tetrahymena pyriformis, the QSAR models were established by the multiple linear regression (MLR) and radial basis function neural network (RBFNN). Unlike other QSAR studies, according to the difference of functional groups (−NO(2), −X), the whole dataset was divided into three groups and further modeled separately. The statistical characteristics for the models are obtained as the following: MLR: n = 36, R(2) = 0.829, RMS (root mean square) = 0.192, RBFNN: n = 36, R(2) = 0.843, RMS = 0.167 for Group 1; MLR: n = 60, R(2) = 0.803, RMS = 0.222, RBFNN: n = 60, R(2) = 0.821, RMS = 0.193 for Group 2; MLR: n = 31 R(2) = 0.852, RMS = 0.192; RBFNN: n = 31, R(2) = 0.885, RMS = 0.163 for Group 3, respectively. The results were within the acceptable range, and the models were found to be statistically robust with high external predictivity. Moreover, the models also gave some insight on those characteristics of the structures that most affect the toxicity. MDPI 2018-04-24 /pmc/articles/PMC6099972/ /pubmed/29695132 http://dx.doi.org/10.3390/molecules23051002 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Luan, Feng
Wang, Ting
Tang, Lili
Zhang, Shuang
Cordeiro, M. Natália Dias Soeiro
Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach
title Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach
title_full Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach
title_fullStr Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach
title_full_unstemmed Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach
title_short Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach
title_sort estimation of the toxicity of different substituted aromatic compounds to the aquatic ciliate tetrahymena pyriformis by qsar approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6099972/
https://www.ncbi.nlm.nih.gov/pubmed/29695132
http://dx.doi.org/10.3390/molecules23051002
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