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Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach
Nowadays, quantitative structure–activity relationship (QSAR) methods have been widely performed to predict the toxicity of compounds to organisms due to their simplicity, ease of implementation, and low hazards. In this study, to estimate the toxicities of substituted aromatic compounds to Tetrahym...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6099972/ https://www.ncbi.nlm.nih.gov/pubmed/29695132 http://dx.doi.org/10.3390/molecules23051002 |
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author | Luan, Feng Wang, Ting Tang, Lili Zhang, Shuang Cordeiro, M. Natália Dias Soeiro |
author_facet | Luan, Feng Wang, Ting Tang, Lili Zhang, Shuang Cordeiro, M. Natália Dias Soeiro |
author_sort | Luan, Feng |
collection | PubMed |
description | Nowadays, quantitative structure–activity relationship (QSAR) methods have been widely performed to predict the toxicity of compounds to organisms due to their simplicity, ease of implementation, and low hazards. In this study, to estimate the toxicities of substituted aromatic compounds to Tetrahymena pyriformis, the QSAR models were established by the multiple linear regression (MLR) and radial basis function neural network (RBFNN). Unlike other QSAR studies, according to the difference of functional groups (−NO(2), −X), the whole dataset was divided into three groups and further modeled separately. The statistical characteristics for the models are obtained as the following: MLR: n = 36, R(2) = 0.829, RMS (root mean square) = 0.192, RBFNN: n = 36, R(2) = 0.843, RMS = 0.167 for Group 1; MLR: n = 60, R(2) = 0.803, RMS = 0.222, RBFNN: n = 60, R(2) = 0.821, RMS = 0.193 for Group 2; MLR: n = 31 R(2) = 0.852, RMS = 0.192; RBFNN: n = 31, R(2) = 0.885, RMS = 0.163 for Group 3, respectively. The results were within the acceptable range, and the models were found to be statistically robust with high external predictivity. Moreover, the models also gave some insight on those characteristics of the structures that most affect the toxicity. |
format | Online Article Text |
id | pubmed-6099972 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-60999722018-11-13 Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach Luan, Feng Wang, Ting Tang, Lili Zhang, Shuang Cordeiro, M. Natália Dias Soeiro Molecules Article Nowadays, quantitative structure–activity relationship (QSAR) methods have been widely performed to predict the toxicity of compounds to organisms due to their simplicity, ease of implementation, and low hazards. In this study, to estimate the toxicities of substituted aromatic compounds to Tetrahymena pyriformis, the QSAR models were established by the multiple linear regression (MLR) and radial basis function neural network (RBFNN). Unlike other QSAR studies, according to the difference of functional groups (−NO(2), −X), the whole dataset was divided into three groups and further modeled separately. The statistical characteristics for the models are obtained as the following: MLR: n = 36, R(2) = 0.829, RMS (root mean square) = 0.192, RBFNN: n = 36, R(2) = 0.843, RMS = 0.167 for Group 1; MLR: n = 60, R(2) = 0.803, RMS = 0.222, RBFNN: n = 60, R(2) = 0.821, RMS = 0.193 for Group 2; MLR: n = 31 R(2) = 0.852, RMS = 0.192; RBFNN: n = 31, R(2) = 0.885, RMS = 0.163 for Group 3, respectively. The results were within the acceptable range, and the models were found to be statistically robust with high external predictivity. Moreover, the models also gave some insight on those characteristics of the structures that most affect the toxicity. MDPI 2018-04-24 /pmc/articles/PMC6099972/ /pubmed/29695132 http://dx.doi.org/10.3390/molecules23051002 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Luan, Feng Wang, Ting Tang, Lili Zhang, Shuang Cordeiro, M. Natália Dias Soeiro Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach |
title | Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach |
title_full | Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach |
title_fullStr | Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach |
title_full_unstemmed | Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach |
title_short | Estimation of the Toxicity of Different Substituted Aromatic Compounds to the Aquatic Ciliate Tetrahymena pyriformis by QSAR Approach |
title_sort | estimation of the toxicity of different substituted aromatic compounds to the aquatic ciliate tetrahymena pyriformis by qsar approach |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6099972/ https://www.ncbi.nlm.nih.gov/pubmed/29695132 http://dx.doi.org/10.3390/molecules23051002 |
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