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Causal Discovery Combining K2 with Brain Storm Optimization Algorithm
Exploring and detecting the causal relations among variables have shown huge practical values in recent years, with numerous opportunities for scientific discovery, and have been commonly seen as the core of data science. Among all possible causal discovery methods, causal discovery based on a const...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6100085/ https://www.ncbi.nlm.nih.gov/pubmed/30012940 http://dx.doi.org/10.3390/molecules23071729 |
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author | Hong, Yinghan Hao, Zhifeng Mai, Guizhen Huang, Han Kumar Sangaiah, Arun |
author_facet | Hong, Yinghan Hao, Zhifeng Mai, Guizhen Huang, Han Kumar Sangaiah, Arun |
author_sort | Hong, Yinghan |
collection | PubMed |
description | Exploring and detecting the causal relations among variables have shown huge practical values in recent years, with numerous opportunities for scientific discovery, and have been commonly seen as the core of data science. Among all possible causal discovery methods, causal discovery based on a constraint approach could recover the causal structures from passive observational data in general cases, and had shown extensive prospects in numerous real world applications. However, when the graph was sufficiently large, it did not work well. To alleviate this problem, an improved causal structure learning algorithm named brain storm optimization (BSO), is presented in this paper, combining K2 with brain storm optimization (K2-BSO). Here BSO is used to search optimal topological order of nodes instead of graph space. This paper assumes that dataset is generated by conforming to a causal diagram in which each variable is generated from its parent based on a causal mechanism. We designed an elaborate distance function for clustering step in BSO according to the mechanism of K2. The graph space therefore was reduced to a smaller topological order space and the order space can be further reduced by an efficient clustering method. The experimental results on various real-world datasets showed our methods outperformed the traditional search and score methods and the state-of-the-art genetic algorithm-based methods. |
format | Online Article Text |
id | pubmed-6100085 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-61000852018-11-13 Causal Discovery Combining K2 with Brain Storm Optimization Algorithm Hong, Yinghan Hao, Zhifeng Mai, Guizhen Huang, Han Kumar Sangaiah, Arun Molecules Article Exploring and detecting the causal relations among variables have shown huge practical values in recent years, with numerous opportunities for scientific discovery, and have been commonly seen as the core of data science. Among all possible causal discovery methods, causal discovery based on a constraint approach could recover the causal structures from passive observational data in general cases, and had shown extensive prospects in numerous real world applications. However, when the graph was sufficiently large, it did not work well. To alleviate this problem, an improved causal structure learning algorithm named brain storm optimization (BSO), is presented in this paper, combining K2 with brain storm optimization (K2-BSO). Here BSO is used to search optimal topological order of nodes instead of graph space. This paper assumes that dataset is generated by conforming to a causal diagram in which each variable is generated from its parent based on a causal mechanism. We designed an elaborate distance function for clustering step in BSO according to the mechanism of K2. The graph space therefore was reduced to a smaller topological order space and the order space can be further reduced by an efficient clustering method. The experimental results on various real-world datasets showed our methods outperformed the traditional search and score methods and the state-of-the-art genetic algorithm-based methods. MDPI 2018-07-16 /pmc/articles/PMC6100085/ /pubmed/30012940 http://dx.doi.org/10.3390/molecules23071729 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Hong, Yinghan Hao, Zhifeng Mai, Guizhen Huang, Han Kumar Sangaiah, Arun Causal Discovery Combining K2 with Brain Storm Optimization Algorithm |
title | Causal Discovery Combining K2 with Brain Storm Optimization Algorithm |
title_full | Causal Discovery Combining K2 with Brain Storm Optimization Algorithm |
title_fullStr | Causal Discovery Combining K2 with Brain Storm Optimization Algorithm |
title_full_unstemmed | Causal Discovery Combining K2 with Brain Storm Optimization Algorithm |
title_short | Causal Discovery Combining K2 with Brain Storm Optimization Algorithm |
title_sort | causal discovery combining k2 with brain storm optimization algorithm |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6100085/ https://www.ncbi.nlm.nih.gov/pubmed/30012940 http://dx.doi.org/10.3390/molecules23071729 |
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