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Big data analysis for evaluating bioinvasion risk
BACKGROUND: Global maritime trade plays an important role in the modern transportation industry. It brings significant economic profit along with bioinvasion risk. Species translocate and establish in a non-native area through ballast water and biofouling. Aiming at aquatic bioinvasion issue, people...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6101070/ https://www.ncbi.nlm.nih.gov/pubmed/30367580 http://dx.doi.org/10.1186/s12859-018-2272-5 |
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author | Wang, Shengling Wang, Chenyu Wang, Shenling Ma, Liran |
author_facet | Wang, Shengling Wang, Chenyu Wang, Shenling Ma, Liran |
author_sort | Wang, Shengling |
collection | PubMed |
description | BACKGROUND: Global maritime trade plays an important role in the modern transportation industry. It brings significant economic profit along with bioinvasion risk. Species translocate and establish in a non-native area through ballast water and biofouling. Aiming at aquatic bioinvasion issue, people proposed various suggestions for bioinvasion management. Nonetheless, these suggestions only focus on the chance of a port been affected but ignore the port’s ability to further spread the invaded species. RESULTS: To tackle the issues of the existing work, we propose a biosecurity triggering mechanism, where the bioinvasion risk of a port is estimated according to both the invaded risk of a port and its power of being a stepping-stone. To compute the invaded risk, we utilize the automatic identification system data, the ballast water data and marine environmental data. According to the invaded risk of ports, we construct a species invasion network (SIN). The incoming bioinvasion risk is derived from invaded risk data while the invasion risk spreading capability of each port is evaluated by s-core decomposition of SIN. CONCLUSIONS: We illustrate 100 ports in the world that have the highest bioinvasion risk when the invaded risk and stepping-stone bioinvasion risk are equally treated. There are two bioinvasion risk intensive regions, namely the Western Europe (including the Western European margin and the Mediterranean) and the Asia-Pacific, which are just the region with a high growth rate of non-indigenous species and the area that has been identified as a source for many of non-indigenous species discovered elsewhere (especially the Asian clam, which is assumed to be the most invasive species worldwide). |
format | Online Article Text |
id | pubmed-6101070 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-61010702018-08-27 Big data analysis for evaluating bioinvasion risk Wang, Shengling Wang, Chenyu Wang, Shenling Ma, Liran BMC Bioinformatics Research BACKGROUND: Global maritime trade plays an important role in the modern transportation industry. It brings significant economic profit along with bioinvasion risk. Species translocate and establish in a non-native area through ballast water and biofouling. Aiming at aquatic bioinvasion issue, people proposed various suggestions for bioinvasion management. Nonetheless, these suggestions only focus on the chance of a port been affected but ignore the port’s ability to further spread the invaded species. RESULTS: To tackle the issues of the existing work, we propose a biosecurity triggering mechanism, where the bioinvasion risk of a port is estimated according to both the invaded risk of a port and its power of being a stepping-stone. To compute the invaded risk, we utilize the automatic identification system data, the ballast water data and marine environmental data. According to the invaded risk of ports, we construct a species invasion network (SIN). The incoming bioinvasion risk is derived from invaded risk data while the invasion risk spreading capability of each port is evaluated by s-core decomposition of SIN. CONCLUSIONS: We illustrate 100 ports in the world that have the highest bioinvasion risk when the invaded risk and stepping-stone bioinvasion risk are equally treated. There are two bioinvasion risk intensive regions, namely the Western Europe (including the Western European margin and the Mediterranean) and the Asia-Pacific, which are just the region with a high growth rate of non-indigenous species and the area that has been identified as a source for many of non-indigenous species discovered elsewhere (especially the Asian clam, which is assumed to be the most invasive species worldwide). BioMed Central 2018-08-13 /pmc/articles/PMC6101070/ /pubmed/30367580 http://dx.doi.org/10.1186/s12859-018-2272-5 Text en © The Author(s) 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Wang, Shengling Wang, Chenyu Wang, Shenling Ma, Liran Big data analysis for evaluating bioinvasion risk |
title | Big data analysis for evaluating bioinvasion risk |
title_full | Big data analysis for evaluating bioinvasion risk |
title_fullStr | Big data analysis for evaluating bioinvasion risk |
title_full_unstemmed | Big data analysis for evaluating bioinvasion risk |
title_short | Big data analysis for evaluating bioinvasion risk |
title_sort | big data analysis for evaluating bioinvasion risk |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6101070/ https://www.ncbi.nlm.nih.gov/pubmed/30367580 http://dx.doi.org/10.1186/s12859-018-2272-5 |
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