Cargando…

A new estimation of protein-level false discovery rate

BACKGROUND: In mass spectrometry-based proteomics, protein identification is an essential task. Evaluating the statistical significance of the protein identification result is critical to the success of proteomics studies. Controlling the false discovery rate (FDR) is the most common method for assu...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wu, Guanying, Wan, Xiang, Xu, Baohua
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2018
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6101079/ https://www.ncbi.nlm.nih.gov/pubmed/30367581 http://dx.doi.org/10.1186/s12864-018-4923-3

Ejemplares similares

False discovery rate estimation and heterobifunctional cross-linkers
por: Fischer, Lutz, et al.
Publicado: (2018)

A unified approach to false discovery rate estimation
por: Strimmer, Korbinian
Publicado: (2008)

False discovery rates: a new deal
por: Stephens, Matthew
Publicado: (2017)

False discovery rate estimation using candidate peptides for each spectrum
por: Lee, Sangjeong, et al.
Publicado: (2022)

On correcting the overestimation of the permutation-based false discovery rate estimator
por: Jiao, Shuo, et al.
Publicado: (2008)

Improved False Discovery Rate Estimation Procedure for Shotgun Proteomics
por: Keich, Uri, et al.
Publicado: (2015)

How to talk about protein‐level false discovery rates in shotgun proteomics
por: The, Matthew, et al.
Publicado: (2016)

A direct approach to estimating false discovery rates conditional on covariates
por: Boca, Simina M., et al.
Publicado: (2018)

Target-small decoy search strategy for false discovery rate estimation
por: Kim, Hyunwoo, et al.
Publicado: (2019)

Correction to “Improved False Discovery Rate Estimation Procedure for Shotgun Proteomics”
por: Keich, Uri, et al.
Publicado: (2016)

A comparative review of estimates of the proportion unchanged genes and the false discovery rate
por: Broberg, Per
Publicado: (2005)

A constrained polynomial regression procedure for estimating the local False Discovery Rate
por: Dalmasso, Cyril, et al.
Publicado: (2007)

A Comparison of Two Classes of Methods for Estimating False Discovery Rates in Microarray Studies
por: Hansen, Emily, et al.
Publicado: (2012)

False discovery rates in spectral identification
por: Jeong, Kyowon, et al.
Publicado: (2012)

Controlling the Rate of GWAS False Discoveries
por: Brzyski, Damian, et al.
Publicado: (2017)

A Fuzzy Permutation Method for False Discovery Rate Control
por: Yang, Ya-Hui, et al.
Publicado: (2016)

Estimating the local false discovery rate via a bootstrap solution to the reference class problem
por: Abbas-Aghababazadeh, Farnoosh, et al.
Publicado: (2018)

Correspondence (reply): The application conditions of false discovery rate control
por: Zhang, Hongbin, et al.
Publicado: (2022)

Local false discovery rate estimation using feature reliability in LC/MS metabolomics data
por: Chong, Elizabeth Y., et al.
Publicado: (2015)

Control procedures and estimators of the false discovery rate and their application in low-dimensional settings: an empirical investigation
por: Brinster, Regina, et al.
Publicado: (2018)

Reanalysis of ProteomicsDB Using an Accurate, Sensitive, and Scalable False Discovery Rate Estimation Approach for Protein Groups
por: The, Matthew, et al.
Publicado: (2022)

Comparison of false-discovery rates of various decoy databases
por: Lee, Sangjeong, et al.
Publicado: (2021)

4497 Accessible False Discovery Rate Computation
por: Hollister, Megan C, et al.
Publicado: (2020)

The functional false discovery rate with applications to genomics
por: Chen, Xiongzhi, et al.
Publicado: (2019)

Testing Jumps via False Discovery Rate Control
por: Yen, Yu-Min
Publicado: (2013)

Kerfdr: a semi-parametric kernel-based approach to local false discovery rate estimation
por: Guedj, Mickael, et al.
Publicado: (2009)

Local false discovery rate facilitates comparison of different microarray experiments
por: Hong, Wan-Jen, et al.
Publicado: (2009)

A note on the false discovery rate of novel peptides in proteogenomics
por: Zhang, Kun, et al.
Publicado: (2015)

Empirical Bayes estimation of posterior probabilities of enrichment: A comparative study of five estimators of the local false discovery rate
por: Yang, Zhenyu, et al.
Publicado: (2013)

False discovery rate control in two-stage designs
por: Zehetmayer, Sonja, et al.
Publicado: (2012)

An investigation of the false discovery rate and the misinterpretation of p-values
por: Colquhoun, David
Publicado: (2014)

Importance of presenting the variability of the false discovery rate control
por: Lin, Yi-Ting, et al.
Publicado: (2015)

FDRestimation: Flexible False Discovery Rate Computation in R
por: Murray, Megan H., et al.
Publicado: (2021)

False discovery rate control in cancer biomarker selection
por: Li, Zhaoming
Publicado: (2023)

ConReg-R: Extrapolative recalibration of the empirical distribution of p-values to improve false discovery rate estimates
por: Li, Juntao, et al.
Publicado: (2011)

Sources of variation in false discovery rate estimation include sample size, correlation, and inherent differences between groups
por: Zhang, Jiexin, et al.
Publicado: (2012)

Grouped False-Discovery Rate for Removing the Gene-Set-Level Bias of RNA-seq
por: Yang, Tae Young, et al.
Publicado: (2013)

Rank-invariant resampling based estimation of false discovery rate for analysis of small sample microarray data
por: Jain, Nitin, et al.
Publicado: (2005)

MHCVision: estimation of global and local false discovery rate for MHC class I peptide binding prediction
por: Pearngam, Phorutai, et al.
Publicado: (2021)

Varlociraptor: enhancing sensitivity and controlling false discovery rate in somatic indel discovery
por: Köster, Johannes, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_8bavd1k57fk88n98ppe9ughg1j