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Agreement and reliability statistics for shapes

We describe a methodology for assessing agreement and reliability among a set of shapes. Motivated by recent studies of the reliability of manually segmented medical images, we focus on shapes composed of rasterized, binary-valued data representing closed geometric regions of interest. The methodolo...

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Detalles Bibliográficos
Autores principales: Smith, Travis B., Smith, Ning
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6107162/
https://www.ncbi.nlm.nih.gov/pubmed/30138326
http://dx.doi.org/10.1371/journal.pone.0202087
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author Smith, Travis B.
Smith, Ning
author_facet Smith, Travis B.
Smith, Ning
author_sort Smith, Travis B.
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description We describe a methodology for assessing agreement and reliability among a set of shapes. Motivated by recent studies of the reliability of manually segmented medical images, we focus on shapes composed of rasterized, binary-valued data representing closed geometric regions of interest. The methodology naturally generalizes to N dimensions and other data types, though. We formulate the shape variance, shape correlation and shape intraclass correlation coefficient (ICC) in terms of a simple distance metric, the Manhattan norm, which quantifies the absolute difference between any two shapes. We demonstrate applications of this methodology by working through example shape variance calculations in 1-D, for the analysis of overlapping line segments, and 2-D, for the analysis of overlapping regions. We also report the results of a simulated reliability analysis of manually delineated shape boundaries, and we compare the shape ICC with the more conventional and commonly used area ICC. The proposed shape-sensitive methodology captures all of the variation in the shape measurements, and it provides a more accurate estimate of the measurement reliability than an analysis of only the measured areas.
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spelling pubmed-61071622018-08-30 Agreement and reliability statistics for shapes Smith, Travis B. Smith, Ning PLoS One Research Article We describe a methodology for assessing agreement and reliability among a set of shapes. Motivated by recent studies of the reliability of manually segmented medical images, we focus on shapes composed of rasterized, binary-valued data representing closed geometric regions of interest. The methodology naturally generalizes to N dimensions and other data types, though. We formulate the shape variance, shape correlation and shape intraclass correlation coefficient (ICC) in terms of a simple distance metric, the Manhattan norm, which quantifies the absolute difference between any two shapes. We demonstrate applications of this methodology by working through example shape variance calculations in 1-D, for the analysis of overlapping line segments, and 2-D, for the analysis of overlapping regions. We also report the results of a simulated reliability analysis of manually delineated shape boundaries, and we compare the shape ICC with the more conventional and commonly used area ICC. The proposed shape-sensitive methodology captures all of the variation in the shape measurements, and it provides a more accurate estimate of the measurement reliability than an analysis of only the measured areas. Public Library of Science 2018-08-23 /pmc/articles/PMC6107162/ /pubmed/30138326 http://dx.doi.org/10.1371/journal.pone.0202087 Text en © 2018 Smith, Smith http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Smith, Travis B.
Smith, Ning
Agreement and reliability statistics for shapes
title Agreement and reliability statistics for shapes
title_full Agreement and reliability statistics for shapes
title_fullStr Agreement and reliability statistics for shapes
title_full_unstemmed Agreement and reliability statistics for shapes
title_short Agreement and reliability statistics for shapes
title_sort agreement and reliability statistics for shapes
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6107162/
https://www.ncbi.nlm.nih.gov/pubmed/30138326
http://dx.doi.org/10.1371/journal.pone.0202087
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