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Agreement and reliability statistics for shapes
We describe a methodology for assessing agreement and reliability among a set of shapes. Motivated by recent studies of the reliability of manually segmented medical images, we focus on shapes composed of rasterized, binary-valued data representing closed geometric regions of interest. The methodolo...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6107162/ https://www.ncbi.nlm.nih.gov/pubmed/30138326 http://dx.doi.org/10.1371/journal.pone.0202087 |
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author | Smith, Travis B. Smith, Ning |
author_facet | Smith, Travis B. Smith, Ning |
author_sort | Smith, Travis B. |
collection | PubMed |
description | We describe a methodology for assessing agreement and reliability among a set of shapes. Motivated by recent studies of the reliability of manually segmented medical images, we focus on shapes composed of rasterized, binary-valued data representing closed geometric regions of interest. The methodology naturally generalizes to N dimensions and other data types, though. We formulate the shape variance, shape correlation and shape intraclass correlation coefficient (ICC) in terms of a simple distance metric, the Manhattan norm, which quantifies the absolute difference between any two shapes. We demonstrate applications of this methodology by working through example shape variance calculations in 1-D, for the analysis of overlapping line segments, and 2-D, for the analysis of overlapping regions. We also report the results of a simulated reliability analysis of manually delineated shape boundaries, and we compare the shape ICC with the more conventional and commonly used area ICC. The proposed shape-sensitive methodology captures all of the variation in the shape measurements, and it provides a more accurate estimate of the measurement reliability than an analysis of only the measured areas. |
format | Online Article Text |
id | pubmed-6107162 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-61071622018-08-30 Agreement and reliability statistics for shapes Smith, Travis B. Smith, Ning PLoS One Research Article We describe a methodology for assessing agreement and reliability among a set of shapes. Motivated by recent studies of the reliability of manually segmented medical images, we focus on shapes composed of rasterized, binary-valued data representing closed geometric regions of interest. The methodology naturally generalizes to N dimensions and other data types, though. We formulate the shape variance, shape correlation and shape intraclass correlation coefficient (ICC) in terms of a simple distance metric, the Manhattan norm, which quantifies the absolute difference between any two shapes. We demonstrate applications of this methodology by working through example shape variance calculations in 1-D, for the analysis of overlapping line segments, and 2-D, for the analysis of overlapping regions. We also report the results of a simulated reliability analysis of manually delineated shape boundaries, and we compare the shape ICC with the more conventional and commonly used area ICC. The proposed shape-sensitive methodology captures all of the variation in the shape measurements, and it provides a more accurate estimate of the measurement reliability than an analysis of only the measured areas. Public Library of Science 2018-08-23 /pmc/articles/PMC6107162/ /pubmed/30138326 http://dx.doi.org/10.1371/journal.pone.0202087 Text en © 2018 Smith, Smith http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Smith, Travis B. Smith, Ning Agreement and reliability statistics for shapes |
title | Agreement and reliability statistics for shapes |
title_full | Agreement and reliability statistics for shapes |
title_fullStr | Agreement and reliability statistics for shapes |
title_full_unstemmed | Agreement and reliability statistics for shapes |
title_short | Agreement and reliability statistics for shapes |
title_sort | agreement and reliability statistics for shapes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6107162/ https://www.ncbi.nlm.nih.gov/pubmed/30138326 http://dx.doi.org/10.1371/journal.pone.0202087 |
work_keys_str_mv | AT smithtravisb agreementandreliabilitystatisticsforshapes AT smithning agreementandreliabilitystatisticsforshapes |