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Microbial assay of N(2) fixation rate, a simple alternate for acetylene reduction assay

Nitrogen is an essential element for living creatures in every ecosystem but nitrogen cannot be absorbed by the plant itself directly from the atmosphere, so for nitrogen, plant depends on both free living and symbiotic microbes present in the soil. Nitrogen fixation potentiality of the soil thus re...

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Autores principales: Das, Subhajit, De, Tarun Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6107887/
https://www.ncbi.nlm.nih.gov/pubmed/30151350
http://dx.doi.org/10.1016/j.mex.2017.11.010
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author Das, Subhajit
De, Tarun Kumar
author_facet Das, Subhajit
De, Tarun Kumar
author_sort Das, Subhajit
collection PubMed
description Nitrogen is an essential element for living creatures in every ecosystem but nitrogen cannot be absorbed by the plant itself directly from the atmosphere, so for nitrogen, plant depends on both free living and symbiotic microbes present in the soil. Nitrogen fixation potentiality of the soil thus reveals its fertility with respect to nitrogen. Researchers developed and modified techniques for measuring nitrogen fixation rate of the soil and acetylene reduction assay (ARA) technique became the most popular till now. At the same time this technique has few limitations especially for the researchers from third world country due to lack of special infrastructure in the laboratory and the most required instrument for this technique, gas chromatograph machine, is very expensive. Any alternation of this technique is deserved highly for the researchers from the developing countries. The present work/method explained a new approach for determination of nitrogen fixation rate and this new method was named as “Microbial bio-assay”. In this technique nitrogen fixers were cultured in specific medium and condition and after required time of interval the amount of nitrogen fixed by them were calculated. Exploration of soil of the Sundarban mangrove ecosystem was performed regarding the microbial N(2) fixing capacity of that particular ecosystem. • The nitrogen fixation rate measured by acetylene reduction assay (ARA) was 1.13 times lower than the N(2) fixation rate measured by microbial bio-assay. • Microbial bio-assay can be used as an alternate of ARA method to measure N(2) fixation rate. The rates of N(2) fixation measured by both two methods were positively correlated with the population of N(2) fixing bacteria present in the soil of that particular ecosystem (R(2) = 0.85, p < 0.005, n = 85 for microbial bio-assay and R(2) = 0.78, p < 0.005, n = 85 for ARA).
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spelling pubmed-61078872018-08-27 Microbial assay of N(2) fixation rate, a simple alternate for acetylene reduction assay Das, Subhajit De, Tarun Kumar MethodsX Agricultural and Biological Science Nitrogen is an essential element for living creatures in every ecosystem but nitrogen cannot be absorbed by the plant itself directly from the atmosphere, so for nitrogen, plant depends on both free living and symbiotic microbes present in the soil. Nitrogen fixation potentiality of the soil thus reveals its fertility with respect to nitrogen. Researchers developed and modified techniques for measuring nitrogen fixation rate of the soil and acetylene reduction assay (ARA) technique became the most popular till now. At the same time this technique has few limitations especially for the researchers from third world country due to lack of special infrastructure in the laboratory and the most required instrument for this technique, gas chromatograph machine, is very expensive. Any alternation of this technique is deserved highly for the researchers from the developing countries. The present work/method explained a new approach for determination of nitrogen fixation rate and this new method was named as “Microbial bio-assay”. In this technique nitrogen fixers were cultured in specific medium and condition and after required time of interval the amount of nitrogen fixed by them were calculated. Exploration of soil of the Sundarban mangrove ecosystem was performed regarding the microbial N(2) fixing capacity of that particular ecosystem. • The nitrogen fixation rate measured by acetylene reduction assay (ARA) was 1.13 times lower than the N(2) fixation rate measured by microbial bio-assay. • Microbial bio-assay can be used as an alternate of ARA method to measure N(2) fixation rate. The rates of N(2) fixation measured by both two methods were positively correlated with the population of N(2) fixing bacteria present in the soil of that particular ecosystem (R(2) = 0.85, p < 0.005, n = 85 for microbial bio-assay and R(2) = 0.78, p < 0.005, n = 85 for ARA). Elsevier 2018-01-06 /pmc/articles/PMC6107887/ /pubmed/30151350 http://dx.doi.org/10.1016/j.mex.2017.11.010 Text en © 2018 Published by Elsevier B.V. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Agricultural and Biological Science
Das, Subhajit
De, Tarun Kumar
Microbial assay of N(2) fixation rate, a simple alternate for acetylene reduction assay
title Microbial assay of N(2) fixation rate, a simple alternate for acetylene reduction assay
title_full Microbial assay of N(2) fixation rate, a simple alternate for acetylene reduction assay
title_fullStr Microbial assay of N(2) fixation rate, a simple alternate for acetylene reduction assay
title_full_unstemmed Microbial assay of N(2) fixation rate, a simple alternate for acetylene reduction assay
title_short Microbial assay of N(2) fixation rate, a simple alternate for acetylene reduction assay
title_sort microbial assay of n(2) fixation rate, a simple alternate for acetylene reduction assay
topic Agricultural and Biological Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6107887/
https://www.ncbi.nlm.nih.gov/pubmed/30151350
http://dx.doi.org/10.1016/j.mex.2017.11.010
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