Cargando…

A refined method for digitally modeling small and complex plant structures in 3D: An example from the grasses (Poaceae)

PREMISE OF THE STUDY: A refined procedure is described for modeling small, intricate plant structures using computer‐aided design software. The procedure facilitates the study of wind pollination in the family Poaceae and provides virtual biological illustrations for public outreach. METHODS AND RES...

Descripción completa

Detalles Bibliográficos
Autores principales: Klahs, Phillip C., Gallaher, Timothy J., Clark, Lynn G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6110240/
https://www.ncbi.nlm.nih.gov/pubmed/30214840
http://dx.doi.org/10.1002/aps3.1177
_version_ 1783350444105400320
author Klahs, Phillip C.
Gallaher, Timothy J.
Clark, Lynn G.
author_facet Klahs, Phillip C.
Gallaher, Timothy J.
Clark, Lynn G.
author_sort Klahs, Phillip C.
collection PubMed
description PREMISE OF THE STUDY: A refined procedure is described for modeling small, intricate plant structures using computer‐aided design software. The procedure facilitates the study of wind pollination in the family Poaceae and provides virtual biological illustrations for public outreach. METHODS AND RESULTS: Spikelets were fixed in gFAA, dehydrated using ethanol and xylene, embedded in paraffin wax, and then sectioned with a rotary microtome. Images of serial sections were used as a reference for modeling the shape of bracts with splines in a computer‐aided design program. Virtual models produced by this method have many potential uses; examples include geometric morphometric analyses and simulations of computational fluid dynamics. CONCLUSIONS: This protocol is a synthesis of modern biological illustration and engineering technology. Virtual models facilitate quantitative experiments that may address questions about reproductive biology, conditions shaping the form of anatomical support, or the morphological evolution of structures of biomechanical interest.
format Online
Article
Text
id pubmed-6110240
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-61102402018-09-13 A refined method for digitally modeling small and complex plant structures in 3D: An example from the grasses (Poaceae) Klahs, Phillip C. Gallaher, Timothy J. Clark, Lynn G. Appl Plant Sci Protocol Notes PREMISE OF THE STUDY: A refined procedure is described for modeling small, intricate plant structures using computer‐aided design software. The procedure facilitates the study of wind pollination in the family Poaceae and provides virtual biological illustrations for public outreach. METHODS AND RESULTS: Spikelets were fixed in gFAA, dehydrated using ethanol and xylene, embedded in paraffin wax, and then sectioned with a rotary microtome. Images of serial sections were used as a reference for modeling the shape of bracts with splines in a computer‐aided design program. Virtual models produced by this method have many potential uses; examples include geometric morphometric analyses and simulations of computational fluid dynamics. CONCLUSIONS: This protocol is a synthesis of modern biological illustration and engineering technology. Virtual models facilitate quantitative experiments that may address questions about reproductive biology, conditions shaping the form of anatomical support, or the morphological evolution of structures of biomechanical interest. John Wiley and Sons Inc. 2018-08-27 /pmc/articles/PMC6110240/ /pubmed/30214840 http://dx.doi.org/10.1002/aps3.1177 Text en © 2018 Klahs et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Protocol Notes
Klahs, Phillip C.
Gallaher, Timothy J.
Clark, Lynn G.
A refined method for digitally modeling small and complex plant structures in 3D: An example from the grasses (Poaceae)
title A refined method for digitally modeling small and complex plant structures in 3D: An example from the grasses (Poaceae)
title_full A refined method for digitally modeling small and complex plant structures in 3D: An example from the grasses (Poaceae)
title_fullStr A refined method for digitally modeling small and complex plant structures in 3D: An example from the grasses (Poaceae)
title_full_unstemmed A refined method for digitally modeling small and complex plant structures in 3D: An example from the grasses (Poaceae)
title_short A refined method for digitally modeling small and complex plant structures in 3D: An example from the grasses (Poaceae)
title_sort refined method for digitally modeling small and complex plant structures in 3d: an example from the grasses (poaceae)
topic Protocol Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6110240/
https://www.ncbi.nlm.nih.gov/pubmed/30214840
http://dx.doi.org/10.1002/aps3.1177
work_keys_str_mv AT klahsphillipc arefinedmethodfordigitallymodelingsmallandcomplexplantstructuresin3danexamplefromthegrassespoaceae
AT gallahertimothyj arefinedmethodfordigitallymodelingsmallandcomplexplantstructuresin3danexamplefromthegrassespoaceae
AT clarklynng arefinedmethodfordigitallymodelingsmallandcomplexplantstructuresin3danexamplefromthegrassespoaceae
AT klahsphillipc refinedmethodfordigitallymodelingsmallandcomplexplantstructuresin3danexamplefromthegrassespoaceae
AT gallahertimothyj refinedmethodfordigitallymodelingsmallandcomplexplantstructuresin3danexamplefromthegrassespoaceae
AT clarklynng refinedmethodfordigitallymodelingsmallandcomplexplantstructuresin3danexamplefromthegrassespoaceae