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Genetic diversity of Lepista nuda (Agaricales, Basidiomycota) in Northeast China as indicated by SRAP and ISSR markers

Lepista nuda is a popular wild edible mushroom that grows in China. In this study, we used ISSR and SRAP molecular markers to analyze the genetic diversity of 72 samples of L. nuda from eight populations in Northeast China. In total, six ISSR primers and five pairs of SRAP primers that produced clea...

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Autores principales: Du, Jing, Guo, Hong-Bo, Li, Qi, Forsythe, Adrian, Chen, Xu-Hui, Yu, Xiao-Dan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6110484/
https://www.ncbi.nlm.nih.gov/pubmed/30148893
http://dx.doi.org/10.1371/journal.pone.0202761
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author Du, Jing
Guo, Hong-Bo
Li, Qi
Forsythe, Adrian
Chen, Xu-Hui
Yu, Xiao-Dan
author_facet Du, Jing
Guo, Hong-Bo
Li, Qi
Forsythe, Adrian
Chen, Xu-Hui
Yu, Xiao-Dan
author_sort Du, Jing
collection PubMed
description Lepista nuda is a popular wild edible mushroom that grows in China. In this study, we used ISSR and SRAP molecular markers to analyze the genetic diversity of 72 samples of L. nuda from eight populations in Northeast China. In total, six ISSR primers and five pairs of SRAP primers that produced clear and polymorphic banding profiles were selected for assessing L. nuda genetic diversity. The results revealed a high level of genetic variation among the 72 samples (94.4% polymorphism) but a low degree of gene flow among the populations. Among L. nuda populations, genetic distance was not correlated significantly with geographic distance. The antioxidant activity of the samples from each population was also tested and the result showed that all the selected samples had more than 60% DPPH scavenging activities. Nonetheless, the antioxidant activity diversity is not coincident with both the genetic diversity and the geographic distribution. The results indicate that ISSR and SRAP molecular markers are useful for studying the genetic diversity of L. nuda. The results also suggest that L. nuda populations in Northeast China require protection.
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spelling pubmed-61104842018-09-17 Genetic diversity of Lepista nuda (Agaricales, Basidiomycota) in Northeast China as indicated by SRAP and ISSR markers Du, Jing Guo, Hong-Bo Li, Qi Forsythe, Adrian Chen, Xu-Hui Yu, Xiao-Dan PLoS One Research Article Lepista nuda is a popular wild edible mushroom that grows in China. In this study, we used ISSR and SRAP molecular markers to analyze the genetic diversity of 72 samples of L. nuda from eight populations in Northeast China. In total, six ISSR primers and five pairs of SRAP primers that produced clear and polymorphic banding profiles were selected for assessing L. nuda genetic diversity. The results revealed a high level of genetic variation among the 72 samples (94.4% polymorphism) but a low degree of gene flow among the populations. Among L. nuda populations, genetic distance was not correlated significantly with geographic distance. The antioxidant activity of the samples from each population was also tested and the result showed that all the selected samples had more than 60% DPPH scavenging activities. Nonetheless, the antioxidant activity diversity is not coincident with both the genetic diversity and the geographic distribution. The results indicate that ISSR and SRAP molecular markers are useful for studying the genetic diversity of L. nuda. The results also suggest that L. nuda populations in Northeast China require protection. Public Library of Science 2018-08-27 /pmc/articles/PMC6110484/ /pubmed/30148893 http://dx.doi.org/10.1371/journal.pone.0202761 Text en © 2018 Du et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Du, Jing
Guo, Hong-Bo
Li, Qi
Forsythe, Adrian
Chen, Xu-Hui
Yu, Xiao-Dan
Genetic diversity of Lepista nuda (Agaricales, Basidiomycota) in Northeast China as indicated by SRAP and ISSR markers
title Genetic diversity of Lepista nuda (Agaricales, Basidiomycota) in Northeast China as indicated by SRAP and ISSR markers
title_full Genetic diversity of Lepista nuda (Agaricales, Basidiomycota) in Northeast China as indicated by SRAP and ISSR markers
title_fullStr Genetic diversity of Lepista nuda (Agaricales, Basidiomycota) in Northeast China as indicated by SRAP and ISSR markers
title_full_unstemmed Genetic diversity of Lepista nuda (Agaricales, Basidiomycota) in Northeast China as indicated by SRAP and ISSR markers
title_short Genetic diversity of Lepista nuda (Agaricales, Basidiomycota) in Northeast China as indicated by SRAP and ISSR markers
title_sort genetic diversity of lepista nuda (agaricales, basidiomycota) in northeast china as indicated by srap and issr markers
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6110484/
https://www.ncbi.nlm.nih.gov/pubmed/30148893
http://dx.doi.org/10.1371/journal.pone.0202761
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