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An acquisition, curation and management workflow for sustainable, terabyte-scale marine image analysis

Optical imaging is a common technique in ocean research. Diving robots, towed cameras, drop-cameras and TV-guided sampling gear: all produce image data of the underwater environment. Technological advances like 4K cameras, autonomous robots, high-capacity batteries and LED lighting now allow systema...

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Detalles Bibliográficos
Autores principales: Schoening, Timm, Köser, Kevin, Greinert, Jens
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6111891/
https://www.ncbi.nlm.nih.gov/pubmed/30152813
http://dx.doi.org/10.1038/sdata.2018.181
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author Schoening, Timm
Köser, Kevin
Greinert, Jens
author_facet Schoening, Timm
Köser, Kevin
Greinert, Jens
author_sort Schoening, Timm
collection PubMed
description Optical imaging is a common technique in ocean research. Diving robots, towed cameras, drop-cameras and TV-guided sampling gear: all produce image data of the underwater environment. Technological advances like 4K cameras, autonomous robots, high-capacity batteries and LED lighting now allow systematic optical monitoring at large spatial scale and shorter time but with increased data volume and velocity. Volume and velocity are further increased by growing fleets and emerging swarms of autonomous vehicles creating big data sets in parallel. This generates a need for automated data processing to harvest maximum information. Systematic data analysis benefits from calibrated, geo-referenced data with clear metadata description, particularly for machine vision and machine learning. Hence, the expensive data acquisition must be documented, data should be curated as soon as possible, backed up and made publicly available. Here, we present a workflow towards sustainable marine image analysis. We describe guidelines for data acquisition, curation and management and apply it to the use case of a multi-terabyte deep-sea data set acquired by an autonomous underwater vehicle.
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spelling pubmed-61118912018-08-31 An acquisition, curation and management workflow for sustainable, terabyte-scale marine image analysis Schoening, Timm Köser, Kevin Greinert, Jens Sci Data Article Optical imaging is a common technique in ocean research. Diving robots, towed cameras, drop-cameras and TV-guided sampling gear: all produce image data of the underwater environment. Technological advances like 4K cameras, autonomous robots, high-capacity batteries and LED lighting now allow systematic optical monitoring at large spatial scale and shorter time but with increased data volume and velocity. Volume and velocity are further increased by growing fleets and emerging swarms of autonomous vehicles creating big data sets in parallel. This generates a need for automated data processing to harvest maximum information. Systematic data analysis benefits from calibrated, geo-referenced data with clear metadata description, particularly for machine vision and machine learning. Hence, the expensive data acquisition must be documented, data should be curated as soon as possible, backed up and made publicly available. Here, we present a workflow towards sustainable marine image analysis. We describe guidelines for data acquisition, curation and management and apply it to the use case of a multi-terabyte deep-sea data set acquired by an autonomous underwater vehicle. Nature Publishing Group 2018-08-28 /pmc/articles/PMC6111891/ /pubmed/30152813 http://dx.doi.org/10.1038/sdata.2018.181 Text en Copyright © 2018, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Schoening, Timm
Köser, Kevin
Greinert, Jens
An acquisition, curation and management workflow for sustainable, terabyte-scale marine image analysis
title An acquisition, curation and management workflow for sustainable, terabyte-scale marine image analysis
title_full An acquisition, curation and management workflow for sustainable, terabyte-scale marine image analysis
title_fullStr An acquisition, curation and management workflow for sustainable, terabyte-scale marine image analysis
title_full_unstemmed An acquisition, curation and management workflow for sustainable, terabyte-scale marine image analysis
title_short An acquisition, curation and management workflow for sustainable, terabyte-scale marine image analysis
title_sort acquisition, curation and management workflow for sustainable, terabyte-scale marine image analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6111891/
https://www.ncbi.nlm.nih.gov/pubmed/30152813
http://dx.doi.org/10.1038/sdata.2018.181
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