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Characterization of 24 microsatellite markers in Primula chungensis (Primulaceae), a distylous–homostylous species, using MiSeq sequencing
Primula chungensis is a species with considerable floral and mating-system variation, including distylous (outcrossing), homostylous (selfing) and mixed populations that contain both outcrossing and selfing forms. We isolated 24 microsatellite markers from P. chungensis using Illumina MiSeq sequenci...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
KeAi Publishing
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6112135/ https://www.ncbi.nlm.nih.gov/pubmed/30159452 http://dx.doi.org/10.1016/j.pld.2015.12.002 |
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author | Zhou, Wei Li, Haidong Wu, Zhikun Barrett, Spencer C.H. Li, Dezhu Wang, Hong |
author_facet | Zhou, Wei Li, Haidong Wu, Zhikun Barrett, Spencer C.H. Li, Dezhu Wang, Hong |
author_sort | Zhou, Wei |
collection | PubMed |
description | Primula chungensis is a species with considerable floral and mating-system variation, including distylous (outcrossing), homostylous (selfing) and mixed populations that contain both outcrossing and selfing forms. We isolated 24 microsatellite markers from P. chungensis using Illumina MiSeq sequencing. Polymorphism and genetic diversity were then measured based on a sample of 24 individuals from a natural population in southern Tibet. All loci were polymorphic with the number of alleles per locus ranging from 2 to 4. The observed and expected heterozygosity ranged from 0 to 1 and 0.219 to 0.708, respectively. The microsatellite markers we have identified will serve as valuable tools for the investigation of the population genetic structure and phylogeography of P. chungensis and will inform models of the evolutionary history of mating systems in the species. |
format | Online Article Text |
id | pubmed-6112135 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | KeAi Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-61121352018-08-29 Characterization of 24 microsatellite markers in Primula chungensis (Primulaceae), a distylous–homostylous species, using MiSeq sequencing Zhou, Wei Li, Haidong Wu, Zhikun Barrett, Spencer C.H. Li, Dezhu Wang, Hong Plant Divers Article Primula chungensis is a species with considerable floral and mating-system variation, including distylous (outcrossing), homostylous (selfing) and mixed populations that contain both outcrossing and selfing forms. We isolated 24 microsatellite markers from P. chungensis using Illumina MiSeq sequencing. Polymorphism and genetic diversity were then measured based on a sample of 24 individuals from a natural population in southern Tibet. All loci were polymorphic with the number of alleles per locus ranging from 2 to 4. The observed and expected heterozygosity ranged from 0 to 1 and 0.219 to 0.708, respectively. The microsatellite markers we have identified will serve as valuable tools for the investigation of the population genetic structure and phylogeography of P. chungensis and will inform models of the evolutionary history of mating systems in the species. KeAi Publishing 2016-05-24 /pmc/articles/PMC6112135/ /pubmed/30159452 http://dx.doi.org/10.1016/j.pld.2015.12.002 Text en Copyright © 2016 Kunming Institute of Botany, Chinese Academy of Sciences. Publishing services by Elsevier B.V. on behalf of KeAi Communications Co., Ltd. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Zhou, Wei Li, Haidong Wu, Zhikun Barrett, Spencer C.H. Li, Dezhu Wang, Hong Characterization of 24 microsatellite markers in Primula chungensis (Primulaceae), a distylous–homostylous species, using MiSeq sequencing |
title | Characterization of 24 microsatellite markers in Primula chungensis (Primulaceae), a distylous–homostylous species, using MiSeq sequencing |
title_full | Characterization of 24 microsatellite markers in Primula chungensis (Primulaceae), a distylous–homostylous species, using MiSeq sequencing |
title_fullStr | Characterization of 24 microsatellite markers in Primula chungensis (Primulaceae), a distylous–homostylous species, using MiSeq sequencing |
title_full_unstemmed | Characterization of 24 microsatellite markers in Primula chungensis (Primulaceae), a distylous–homostylous species, using MiSeq sequencing |
title_short | Characterization of 24 microsatellite markers in Primula chungensis (Primulaceae), a distylous–homostylous species, using MiSeq sequencing |
title_sort | characterization of 24 microsatellite markers in primula chungensis (primulaceae), a distylous–homostylous species, using miseq sequencing |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6112135/ https://www.ncbi.nlm.nih.gov/pubmed/30159452 http://dx.doi.org/10.1016/j.pld.2015.12.002 |
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