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Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity

The current global challenges that threaten biodiversity are immense and rapidly growing. These biodiversity challenges demand approaches that meld bioinformatics, large-scale phylogeny reconstruction, use of digitized specimen data, and complex post-tree analyses (e.g. niche modeling, niche diversi...

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Autores principales: Soltis, Douglas E., Soltis, Pamela S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: KeAi Publishing 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6112245/
https://www.ncbi.nlm.nih.gov/pubmed/30159477
http://dx.doi.org/10.1016/j.pld.2016.12.001
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author Soltis, Douglas E.
Soltis, Pamela S.
author_facet Soltis, Douglas E.
Soltis, Pamela S.
author_sort Soltis, Douglas E.
collection PubMed
description The current global challenges that threaten biodiversity are immense and rapidly growing. These biodiversity challenges demand approaches that meld bioinformatics, large-scale phylogeny reconstruction, use of digitized specimen data, and complex post-tree analyses (e.g. niche modeling, niche diversification, and other ecological analyses). Recent developments in phylogenetics coupled with emerging cyberinfrastructure and new data sources provide unparalleled opportunities for mobilizing and integrating massive amounts of biological data, driving the discovery of complex patterns and new hypotheses for further study. These developments are not trivial in that biodiversity data on the global scale now being collected and analyzed are inherently complex. The ongoing integration and maturation of biodiversity tools discussed here is transforming biodiversity science, enabling what we broadly term “next-generation” investigations in systematics, ecology, and evolution (i.e., “biodiversity science”). New training that integrates domain knowledge in biodiversity and data science skills is also needed to accelerate research in these areas. Integrative biodiversity science is crucial to the future of global biodiversity. We cannot simply react to continued threats to biodiversity, but via the use of an integrative, multifaceted, big data approach, researchers can now make biodiversity projections to provide crucial data not only for scientists, but also for the public, land managers, policy makers, urban planners, and agriculture.
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spelling pubmed-61122452018-08-29 Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity Soltis, Douglas E. Soltis, Pamela S. Plant Divers Article The current global challenges that threaten biodiversity are immense and rapidly growing. These biodiversity challenges demand approaches that meld bioinformatics, large-scale phylogeny reconstruction, use of digitized specimen data, and complex post-tree analyses (e.g. niche modeling, niche diversification, and other ecological analyses). Recent developments in phylogenetics coupled with emerging cyberinfrastructure and new data sources provide unparalleled opportunities for mobilizing and integrating massive amounts of biological data, driving the discovery of complex patterns and new hypotheses for further study. These developments are not trivial in that biodiversity data on the global scale now being collected and analyzed are inherently complex. The ongoing integration and maturation of biodiversity tools discussed here is transforming biodiversity science, enabling what we broadly term “next-generation” investigations in systematics, ecology, and evolution (i.e., “biodiversity science”). New training that integrates domain knowledge in biodiversity and data science skills is also needed to accelerate research in these areas. Integrative biodiversity science is crucial to the future of global biodiversity. We cannot simply react to continued threats to biodiversity, but via the use of an integrative, multifaceted, big data approach, researchers can now make biodiversity projections to provide crucial data not only for scientists, but also for the public, land managers, policy makers, urban planners, and agriculture. KeAi Publishing 2016-12-24 /pmc/articles/PMC6112245/ /pubmed/30159477 http://dx.doi.org/10.1016/j.pld.2016.12.001 Text en © 2016 Kunming Institute of Botany, Chinese Academy of Sciences. Publishing services by Elsevier B.V. on behalf of KeAi Communications Co., Ltd. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Soltis, Douglas E.
Soltis, Pamela S.
Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity
title Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity
title_full Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity
title_fullStr Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity
title_full_unstemmed Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity
title_short Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity
title_sort mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6112245/
https://www.ncbi.nlm.nih.gov/pubmed/30159477
http://dx.doi.org/10.1016/j.pld.2016.12.001
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