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Estimation of area- and mass-based leaf nitrogen contents of wheat and rice crops from water-removed spectra using continuous wavelet analysis

BACKGROUND: The visible and near infrared region has been widely used to estimate the leaf nitrogen (N) content based on the correlation of N with chlorophyll and deep absorption valleys of chlorophyll in this region. However, most absorption features related to N are located in the shortwave infrar...

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Autores principales: Li, Dong, Wang, Xue, Zheng, Hengbiao, Zhou, Kai, Yao, Xia, Tian, Yongchao, Zhu, Yan, Cao, Weixing, Cheng, Tao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6114889/
https://www.ncbi.nlm.nih.gov/pubmed/30181765
http://dx.doi.org/10.1186/s13007-018-0344-1
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author Li, Dong
Wang, Xue
Zheng, Hengbiao
Zhou, Kai
Yao, Xia
Tian, Yongchao
Zhu, Yan
Cao, Weixing
Cheng, Tao
author_facet Li, Dong
Wang, Xue
Zheng, Hengbiao
Zhou, Kai
Yao, Xia
Tian, Yongchao
Zhu, Yan
Cao, Weixing
Cheng, Tao
author_sort Li, Dong
collection PubMed
description BACKGROUND: The visible and near infrared region has been widely used to estimate the leaf nitrogen (N) content based on the correlation of N with chlorophyll and deep absorption valleys of chlorophyll in this region. However, most absorption features related to N are located in the shortwave infrared (SWIR) region and the physical mechanism of leaf N estimation from fresh leaf reflectance spectra remains unclear. The use of SWIR region may help us reveal the underlying mechanism of casual relationships and better understand the spectral responses to N variation from fresh leaf reflectance spectra. This study combined continuous wavelet analysis (CWA) and water removal technique to improve the estimation of N content and leaf mass per area (LMA) by reducing the effect of water absorption and enhancing absorption signals in the SWIR region. The performance of the wavelet-based method was evaluated for estimating leaf N content and LMA of rice and wheat crops from fresh leaf reflectance spectra collected over a 2-year field experiment and compared with normalization difference (ND)-based spectral indices. RESULTS: The LMA and area-based N content (N(area)) exhibited better correlations with the determined wavelet features derived from the water-removed (WR) spectra (LMA: R(2) = 0.71, N(area): R(2) = 0.77) than those from the measured reflectance (MR) spectra (LMA: R(2) = 0.62, N(area): R(2) = 0.64). The wavelet features performed remarkably better than the optimized ND indices for the estimations of LMA and N(area) with MR spectra or WR spectra. Based on the best estimations of LMA and N(area) with wavelet features from WR spectra, the mass-based N content (N(mass)) could be retrieved with a high accuracy (R(2) = 0.82, RMSE = 0.32%) in the indirect way. This accuracy was higher than that for N(mass) obtained in the direct use of a single wavelet feature (R(2) = 0.68, RMSE = 0.42%). CONCLUSIONS: The enhancement of absorption features in the SWIR region through the CWA applied to water-removed (WR) spectra was able to improve the spectroscopic estimation of leaf N content and LMA as compared to that obtained with the reflectance spectra of fresh leaves. The success in estimating LMA and N with this method would advance the spectroscopic estimations of grain quality parameters for staple crops and individual dry matter constituents for various vegetation types.
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spelling pubmed-61148892018-09-04 Estimation of area- and mass-based leaf nitrogen contents of wheat and rice crops from water-removed spectra using continuous wavelet analysis Li, Dong Wang, Xue Zheng, Hengbiao Zhou, Kai Yao, Xia Tian, Yongchao Zhu, Yan Cao, Weixing Cheng, Tao Plant Methods Research BACKGROUND: The visible and near infrared region has been widely used to estimate the leaf nitrogen (N) content based on the correlation of N with chlorophyll and deep absorption valleys of chlorophyll in this region. However, most absorption features related to N are located in the shortwave infrared (SWIR) region and the physical mechanism of leaf N estimation from fresh leaf reflectance spectra remains unclear. The use of SWIR region may help us reveal the underlying mechanism of casual relationships and better understand the spectral responses to N variation from fresh leaf reflectance spectra. This study combined continuous wavelet analysis (CWA) and water removal technique to improve the estimation of N content and leaf mass per area (LMA) by reducing the effect of water absorption and enhancing absorption signals in the SWIR region. The performance of the wavelet-based method was evaluated for estimating leaf N content and LMA of rice and wheat crops from fresh leaf reflectance spectra collected over a 2-year field experiment and compared with normalization difference (ND)-based spectral indices. RESULTS: The LMA and area-based N content (N(area)) exhibited better correlations with the determined wavelet features derived from the water-removed (WR) spectra (LMA: R(2) = 0.71, N(area): R(2) = 0.77) than those from the measured reflectance (MR) spectra (LMA: R(2) = 0.62, N(area): R(2) = 0.64). The wavelet features performed remarkably better than the optimized ND indices for the estimations of LMA and N(area) with MR spectra or WR spectra. Based on the best estimations of LMA and N(area) with wavelet features from WR spectra, the mass-based N content (N(mass)) could be retrieved with a high accuracy (R(2) = 0.82, RMSE = 0.32%) in the indirect way. This accuracy was higher than that for N(mass) obtained in the direct use of a single wavelet feature (R(2) = 0.68, RMSE = 0.42%). CONCLUSIONS: The enhancement of absorption features in the SWIR region through the CWA applied to water-removed (WR) spectra was able to improve the spectroscopic estimation of leaf N content and LMA as compared to that obtained with the reflectance spectra of fresh leaves. The success in estimating LMA and N with this method would advance the spectroscopic estimations of grain quality parameters for staple crops and individual dry matter constituents for various vegetation types. BioMed Central 2018-08-29 /pmc/articles/PMC6114889/ /pubmed/30181765 http://dx.doi.org/10.1186/s13007-018-0344-1 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Li, Dong
Wang, Xue
Zheng, Hengbiao
Zhou, Kai
Yao, Xia
Tian, Yongchao
Zhu, Yan
Cao, Weixing
Cheng, Tao
Estimation of area- and mass-based leaf nitrogen contents of wheat and rice crops from water-removed spectra using continuous wavelet analysis
title Estimation of area- and mass-based leaf nitrogen contents of wheat and rice crops from water-removed spectra using continuous wavelet analysis
title_full Estimation of area- and mass-based leaf nitrogen contents of wheat and rice crops from water-removed spectra using continuous wavelet analysis
title_fullStr Estimation of area- and mass-based leaf nitrogen contents of wheat and rice crops from water-removed spectra using continuous wavelet analysis
title_full_unstemmed Estimation of area- and mass-based leaf nitrogen contents of wheat and rice crops from water-removed spectra using continuous wavelet analysis
title_short Estimation of area- and mass-based leaf nitrogen contents of wheat and rice crops from water-removed spectra using continuous wavelet analysis
title_sort estimation of area- and mass-based leaf nitrogen contents of wheat and rice crops from water-removed spectra using continuous wavelet analysis
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6114889/
https://www.ncbi.nlm.nih.gov/pubmed/30181765
http://dx.doi.org/10.1186/s13007-018-0344-1
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