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Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments

Marine sediments are important sites for global biogeochemical cycling, mediated by macrofauna and microalgae. However, it is the microorganisms that drive these key processes. There is strong evidence that coastal benthic habitats will be affected by changing environmental variables (rising tempera...

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Autores principales: Hicks, Natalie, Liu, Xuan, Gregory, Richard, Kenny, John, Lucaci, Anita, Lenzi, Luca, Paterson, David M., Duncan, Katherine R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6115492/
https://www.ncbi.nlm.nih.gov/pubmed/30190707
http://dx.doi.org/10.3389/fmicb.2018.01730
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author Hicks, Natalie
Liu, Xuan
Gregory, Richard
Kenny, John
Lucaci, Anita
Lenzi, Luca
Paterson, David M.
Duncan, Katherine R.
author_facet Hicks, Natalie
Liu, Xuan
Gregory, Richard
Kenny, John
Lucaci, Anita
Lenzi, Luca
Paterson, David M.
Duncan, Katherine R.
author_sort Hicks, Natalie
collection PubMed
description Marine sediments are important sites for global biogeochemical cycling, mediated by macrofauna and microalgae. However, it is the microorganisms that drive these key processes. There is strong evidence that coastal benthic habitats will be affected by changing environmental variables (rising temperature, elevated CO(2)), and research has generally focused on the impact on macrofaunal biodiversity and ecosystem services. Despite their importance, there is less understanding of how microbial community assemblages will respond to environmental changes. In this study, a manipulative mesocosm experiment was employed, using next-generation sequencing to assess changes in microbial communities under future environmental change scenarios. Illumina sequencing generated over 11 million 16S rRNA gene sequences (using a primer set biased toward bacteria) and revealed Bacteroidetes and Proteobacteria dominated the total bacterial community of sediment samples. In this study, the sequencing coverage and depth revealed clear changes in species abundance within some phyla. Bacterial community composition was correlated with simulated environmental conditions, and species level community composition was significantly influenced by the mean temperature of the environmental regime (p = 0.002), but not by variation in CO(2) or diurnal temperature variation. Species level changes with increasing mean temperature corresponded with changes in NH(4) concentration, suggesting there is no functional redundancy in microbial communities for nitrogen cycling. Marine coastal biogeochemical cycling under future environmental conditions is likely to be driven by changes in nutrient availability as a direct result of microbial activity.
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spelling pubmed-61154922018-09-06 Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments Hicks, Natalie Liu, Xuan Gregory, Richard Kenny, John Lucaci, Anita Lenzi, Luca Paterson, David M. Duncan, Katherine R. Front Microbiol Microbiology Marine sediments are important sites for global biogeochemical cycling, mediated by macrofauna and microalgae. However, it is the microorganisms that drive these key processes. There is strong evidence that coastal benthic habitats will be affected by changing environmental variables (rising temperature, elevated CO(2)), and research has generally focused on the impact on macrofaunal biodiversity and ecosystem services. Despite their importance, there is less understanding of how microbial community assemblages will respond to environmental changes. In this study, a manipulative mesocosm experiment was employed, using next-generation sequencing to assess changes in microbial communities under future environmental change scenarios. Illumina sequencing generated over 11 million 16S rRNA gene sequences (using a primer set biased toward bacteria) and revealed Bacteroidetes and Proteobacteria dominated the total bacterial community of sediment samples. In this study, the sequencing coverage and depth revealed clear changes in species abundance within some phyla. Bacterial community composition was correlated with simulated environmental conditions, and species level community composition was significantly influenced by the mean temperature of the environmental regime (p = 0.002), but not by variation in CO(2) or diurnal temperature variation. Species level changes with increasing mean temperature corresponded with changes in NH(4) concentration, suggesting there is no functional redundancy in microbial communities for nitrogen cycling. Marine coastal biogeochemical cycling under future environmental conditions is likely to be driven by changes in nutrient availability as a direct result of microbial activity. Frontiers Media S.A. 2018-08-22 /pmc/articles/PMC6115492/ /pubmed/30190707 http://dx.doi.org/10.3389/fmicb.2018.01730 Text en Copyright © 2018 Hicks, Liu, Gregory, Kenny, Lucaci, Lenzi, Paterson and Duncan. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Hicks, Natalie
Liu, Xuan
Gregory, Richard
Kenny, John
Lucaci, Anita
Lenzi, Luca
Paterson, David M.
Duncan, Katherine R.
Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments
title Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments
title_full Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments
title_fullStr Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments
title_full_unstemmed Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments
title_short Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments
title_sort temperature driven changes in benthic bacterial diversity influences biogeochemical cycling in coastal sediments
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6115492/
https://www.ncbi.nlm.nih.gov/pubmed/30190707
http://dx.doi.org/10.3389/fmicb.2018.01730
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