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Detoxification- and Immune-Related Transcriptomic Analysis of Gills from Bay Scallops (Argopecten irradians) in Response to Algal Toxin Okadaic Acid
To reveal the molecular mechanisms triggered by okadaic acid (OA)-exposure in the detoxification and immune system of bay scallops, we studied differentially-expressed genes (DEGs) and the transcriptomic profile in bay scallop gill tissue after 48 h exposure to 500 nM of OA using the Illumina HiSeq...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6115978/ https://www.ncbi.nlm.nih.gov/pubmed/30060565 http://dx.doi.org/10.3390/toxins10080308 |
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author | Chi, Cheng Giri, Sib Sankar Jun, Jin Woo Kim, Sang Wha Kim, Hyoun Joong Kang, Jeong Woo Park, Se Chang |
author_facet | Chi, Cheng Giri, Sib Sankar Jun, Jin Woo Kim, Sang Wha Kim, Hyoun Joong Kang, Jeong Woo Park, Se Chang |
author_sort | Chi, Cheng |
collection | PubMed |
description | To reveal the molecular mechanisms triggered by okadaic acid (OA)-exposure in the detoxification and immune system of bay scallops, we studied differentially-expressed genes (DEGs) and the transcriptomic profile in bay scallop gill tissue after 48 h exposure to 500 nM of OA using the Illumina HiSeq 4000 deep-sequencing platform. De novo assembly of paired-end reads yielded 55,876 unigenes, of which 3204 and 2620 genes were found to be significantly up- or down-regulated, respectively. Gene ontology classification and enrichment analysis of the DEGs detected in bay scallops exposed to OA revealed four ontologies with particularly high functional enrichment, which were ‘cellular process’ (cellular component), ‘metabolic process’ (biological process), ‘immune system process’ (biological process), and ‘catalytic process’ (molecular function). The DEGs revealed that cyclic AMP-responsive element-binding proteins, acid phosphatase, toll-like receptors, nuclear erythroid 2-related factor, and the NADPH2 quinone reductase-related gene were upregulated. In contrast, the expression of some genes related to glutathione S-transferase 1, C-type lectin, complement C1q tumor necrosis factor-related protein, Superoxide dismutase 2 and fibrinogen C domain-containing protein, decreased. The outcomes of this study will be a valuable resource for the study of gene expression induced by marine toxins, and will help understanding of the molecular mechanisms underlying the scallops’ response to OA exposure. |
format | Online Article Text |
id | pubmed-6115978 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-61159782018-08-31 Detoxification- and Immune-Related Transcriptomic Analysis of Gills from Bay Scallops (Argopecten irradians) in Response to Algal Toxin Okadaic Acid Chi, Cheng Giri, Sib Sankar Jun, Jin Woo Kim, Sang Wha Kim, Hyoun Joong Kang, Jeong Woo Park, Se Chang Toxins (Basel) Article To reveal the molecular mechanisms triggered by okadaic acid (OA)-exposure in the detoxification and immune system of bay scallops, we studied differentially-expressed genes (DEGs) and the transcriptomic profile in bay scallop gill tissue after 48 h exposure to 500 nM of OA using the Illumina HiSeq 4000 deep-sequencing platform. De novo assembly of paired-end reads yielded 55,876 unigenes, of which 3204 and 2620 genes were found to be significantly up- or down-regulated, respectively. Gene ontology classification and enrichment analysis of the DEGs detected in bay scallops exposed to OA revealed four ontologies with particularly high functional enrichment, which were ‘cellular process’ (cellular component), ‘metabolic process’ (biological process), ‘immune system process’ (biological process), and ‘catalytic process’ (molecular function). The DEGs revealed that cyclic AMP-responsive element-binding proteins, acid phosphatase, toll-like receptors, nuclear erythroid 2-related factor, and the NADPH2 quinone reductase-related gene were upregulated. In contrast, the expression of some genes related to glutathione S-transferase 1, C-type lectin, complement C1q tumor necrosis factor-related protein, Superoxide dismutase 2 and fibrinogen C domain-containing protein, decreased. The outcomes of this study will be a valuable resource for the study of gene expression induced by marine toxins, and will help understanding of the molecular mechanisms underlying the scallops’ response to OA exposure. MDPI 2018-07-28 /pmc/articles/PMC6115978/ /pubmed/30060565 http://dx.doi.org/10.3390/toxins10080308 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Chi, Cheng Giri, Sib Sankar Jun, Jin Woo Kim, Sang Wha Kim, Hyoun Joong Kang, Jeong Woo Park, Se Chang Detoxification- and Immune-Related Transcriptomic Analysis of Gills from Bay Scallops (Argopecten irradians) in Response to Algal Toxin Okadaic Acid |
title | Detoxification- and Immune-Related Transcriptomic Analysis of Gills from Bay Scallops (Argopecten
irradians) in Response to Algal Toxin Okadaic Acid |
title_full | Detoxification- and Immune-Related Transcriptomic Analysis of Gills from Bay Scallops (Argopecten
irradians) in Response to Algal Toxin Okadaic Acid |
title_fullStr | Detoxification- and Immune-Related Transcriptomic Analysis of Gills from Bay Scallops (Argopecten
irradians) in Response to Algal Toxin Okadaic Acid |
title_full_unstemmed | Detoxification- and Immune-Related Transcriptomic Analysis of Gills from Bay Scallops (Argopecten
irradians) in Response to Algal Toxin Okadaic Acid |
title_short | Detoxification- and Immune-Related Transcriptomic Analysis of Gills from Bay Scallops (Argopecten
irradians) in Response to Algal Toxin Okadaic Acid |
title_sort | detoxification- and immune-related transcriptomic analysis of gills from bay scallops (argopecten
irradians) in response to algal toxin okadaic acid |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6115978/ https://www.ncbi.nlm.nih.gov/pubmed/30060565 http://dx.doi.org/10.3390/toxins10080308 |
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