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An estimate is worth about a thousand experiments: using order-of-magnitude estimates to identify cellular engineering targets

Biotechnological processes use microbes to convert abundant molecules, such as glucose, into high-value products, such as pharmaceuticals, commodity and fine chemicals, and energy. However, from the outset of the development of a new bioprocess, it is difficult to determine the feasibility, expected...

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Detalles Bibliográficos
Autores principales: Metcalf, Kevin James, Slininger Lee, Marilyn F., Jakobson, Christopher Matthew, Tullman-Ercek, Danielle
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6117934/
https://www.ncbi.nlm.nih.gov/pubmed/30165868
http://dx.doi.org/10.1186/s12934-018-0979-7
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author Metcalf, Kevin James
Slininger Lee, Marilyn F.
Jakobson, Christopher Matthew
Tullman-Ercek, Danielle
author_facet Metcalf, Kevin James
Slininger Lee, Marilyn F.
Jakobson, Christopher Matthew
Tullman-Ercek, Danielle
author_sort Metcalf, Kevin James
collection PubMed
description Biotechnological processes use microbes to convert abundant molecules, such as glucose, into high-value products, such as pharmaceuticals, commodity and fine chemicals, and energy. However, from the outset of the development of a new bioprocess, it is difficult to determine the feasibility, expected yields, and targets for engineering. In this review, we describe a methodology that uses rough estimates to assess the feasibility of a process, approximate the expected product titer of a biological system, and identify variables to manipulate in order to achieve the desired performance. This methodology uses estimates from literature and biological intuition, and can be applied in the early stages of a project to help plan future engineering. We highlight recent literature examples, as well as two case studies from our own work, to demonstrate the use and power of rough estimates. Describing and predicting biological function using estimates guides the research and development phase of new bioprocesses and is a useful first step to understand and build a new microbial factory.
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spelling pubmed-61179342018-09-05 An estimate is worth about a thousand experiments: using order-of-magnitude estimates to identify cellular engineering targets Metcalf, Kevin James Slininger Lee, Marilyn F. Jakobson, Christopher Matthew Tullman-Ercek, Danielle Microb Cell Fact Review Biotechnological processes use microbes to convert abundant molecules, such as glucose, into high-value products, such as pharmaceuticals, commodity and fine chemicals, and energy. However, from the outset of the development of a new bioprocess, it is difficult to determine the feasibility, expected yields, and targets for engineering. In this review, we describe a methodology that uses rough estimates to assess the feasibility of a process, approximate the expected product titer of a biological system, and identify variables to manipulate in order to achieve the desired performance. This methodology uses estimates from literature and biological intuition, and can be applied in the early stages of a project to help plan future engineering. We highlight recent literature examples, as well as two case studies from our own work, to demonstrate the use and power of rough estimates. Describing and predicting biological function using estimates guides the research and development phase of new bioprocesses and is a useful first step to understand and build a new microbial factory. BioMed Central 2018-08-30 /pmc/articles/PMC6117934/ /pubmed/30165868 http://dx.doi.org/10.1186/s12934-018-0979-7 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Review
Metcalf, Kevin James
Slininger Lee, Marilyn F.
Jakobson, Christopher Matthew
Tullman-Ercek, Danielle
An estimate is worth about a thousand experiments: using order-of-magnitude estimates to identify cellular engineering targets
title An estimate is worth about a thousand experiments: using order-of-magnitude estimates to identify cellular engineering targets
title_full An estimate is worth about a thousand experiments: using order-of-magnitude estimates to identify cellular engineering targets
title_fullStr An estimate is worth about a thousand experiments: using order-of-magnitude estimates to identify cellular engineering targets
title_full_unstemmed An estimate is worth about a thousand experiments: using order-of-magnitude estimates to identify cellular engineering targets
title_short An estimate is worth about a thousand experiments: using order-of-magnitude estimates to identify cellular engineering targets
title_sort estimate is worth about a thousand experiments: using order-of-magnitude estimates to identify cellular engineering targets
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6117934/
https://www.ncbi.nlm.nih.gov/pubmed/30165868
http://dx.doi.org/10.1186/s12934-018-0979-7
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