Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)

Presented here are data from Next-Generation Sequencing of differential micrococcal nuclease digestions of formaldehyde-crosslinked chromatin in selected tissues of maize (Zea mays) inbred line B73. Supplemental materials include a wet-bench protocol for making DNS-seq libraries, the DNS-seq data pr...

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Detalles Bibliográficos
Autores principales: Turpin, Zachary M., Vera, Daniel L., Savadel, Savannah D., Lung, Pei-Yau, Wear, Emily E., Mickelson-Young, Leigh, Thompson, William F., Hanley-Bowdoin, Linda, Dennis, Jonathan H., Zhang, Jinfeng, Bass, Hank W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Design
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6117953/
https://www.ncbi.nlm.nih.gov/pubmed/30175199
http://dx.doi.org/10.1016/j.dib.2018.08.015
Descripción
Sumario:Presented here are data from Next-Generation Sequencing of differential micrococcal nuclease digestions of formaldehyde-crosslinked chromatin in selected tissues of maize (Zea mays) inbred line B73. Supplemental materials include a wet-bench protocol for making DNS-seq libraries, the DNS-seq data processing pipeline for producing genome browser tracks. This report also includes the peak-calling pipeline using the iSeg algorithm to segment positive and negative peaks from the DNS-seq difference profiles. The data repository for the sequence data is the NCBI SRA, BioProject Accession PRJNA445708.

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