Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)

Presented here are data from Next-Generation Sequencing of differential micrococcal nuclease digestions of formaldehyde-crosslinked chromatin in selected tissues of maize (Zea mays) inbred line B73. Supplemental materials include a wet-bench protocol for making DNS-seq libraries, the DNS-seq data pr...

Descripción completa

Detalles Bibliográficos
Autores principales: Turpin, Zachary M., Vera, Daniel L., Savadel, Savannah D., Lung, Pei-Yau, Wear, Emily E., Mickelson-Young, Leigh, Thompson, William F., Hanley-Bowdoin, Linda, Dennis, Jonathan H., Zhang, Jinfeng, Bass, Hank W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Design
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6117953/
https://www.ncbi.nlm.nih.gov/pubmed/30175199
http://dx.doi.org/10.1016/j.dib.2018.08.015
_version_ 1783351846384959488
author Turpin, Zachary M.
Vera, Daniel L.
Savadel, Savannah D.
Lung, Pei-Yau
Wear, Emily E.
Mickelson-Young, Leigh
Thompson, William F.
Hanley-Bowdoin, Linda
Dennis, Jonathan H.
Zhang, Jinfeng
Bass, Hank W.
author_facet Turpin, Zachary M.
Vera, Daniel L.
Savadel, Savannah D.
Lung, Pei-Yau
Wear, Emily E.
Mickelson-Young, Leigh
Thompson, William F.
Hanley-Bowdoin, Linda
Dennis, Jonathan H.
Zhang, Jinfeng
Bass, Hank W.
author_sort Turpin, Zachary M.
collection PubMed
description Presented here are data from Next-Generation Sequencing of differential micrococcal nuclease digestions of formaldehyde-crosslinked chromatin in selected tissues of maize (Zea mays) inbred line B73. Supplemental materials include a wet-bench protocol for making DNS-seq libraries, the DNS-seq data processing pipeline for producing genome browser tracks. This report also includes the peak-calling pipeline using the iSeg algorithm to segment positive and negative peaks from the DNS-seq difference profiles. The data repository for the sequence data is the NCBI SRA, BioProject Accession PRJNA445708.
format Online
Article
Text
id pubmed-6117953
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-61179532018-08-31 Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L) Turpin, Zachary M. Vera, Daniel L. Savadel, Savannah D. Lung, Pei-Yau Wear, Emily E. Mickelson-Young, Leigh Thompson, William F. Hanley-Bowdoin, Linda Dennis, Jonathan H. Zhang, Jinfeng Bass, Hank W. Data Brief Design Presented here are data from Next-Generation Sequencing of differential micrococcal nuclease digestions of formaldehyde-crosslinked chromatin in selected tissues of maize (Zea mays) inbred line B73. Supplemental materials include a wet-bench protocol for making DNS-seq libraries, the DNS-seq data processing pipeline for producing genome browser tracks. This report also includes the peak-calling pipeline using the iSeg algorithm to segment positive and negative peaks from the DNS-seq difference profiles. The data repository for the sequence data is the NCBI SRA, BioProject Accession PRJNA445708. Elsevier 2018-08-10 /pmc/articles/PMC6117953/ /pubmed/30175199 http://dx.doi.org/10.1016/j.dib.2018.08.015 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Design
Turpin, Zachary M.
Vera, Daniel L.
Savadel, Savannah D.
Lung, Pei-Yau
Wear, Emily E.
Mickelson-Young, Leigh
Thompson, William F.
Hanley-Bowdoin, Linda
Dennis, Jonathan H.
Zhang, Jinfeng
Bass, Hank W.
Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)
title Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)
title_full Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)
title_fullStr Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)
title_full_unstemmed Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)
title_short Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)
title_sort chromatin structure profile data from dns-seq: differential nuclease sensitivity mapping of four reference tissues of b73 maize (zea mays l)
topic Design
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6117953/
https://www.ncbi.nlm.nih.gov/pubmed/30175199
http://dx.doi.org/10.1016/j.dib.2018.08.015
work_keys_str_mv AT turpinzacharym chromatinstructureprofiledatafromdnsseqdifferentialnucleasesensitivitymappingoffourreferencetissuesofb73maizezeamaysl
AT veradaniell chromatinstructureprofiledatafromdnsseqdifferentialnucleasesensitivitymappingoffourreferencetissuesofb73maizezeamaysl
AT savadelsavannahd chromatinstructureprofiledatafromdnsseqdifferentialnucleasesensitivitymappingoffourreferencetissuesofb73maizezeamaysl
AT lungpeiyau chromatinstructureprofiledatafromdnsseqdifferentialnucleasesensitivitymappingoffourreferencetissuesofb73maizezeamaysl
AT wearemilye chromatinstructureprofiledatafromdnsseqdifferentialnucleasesensitivitymappingoffourreferencetissuesofb73maizezeamaysl
AT mickelsonyoungleigh chromatinstructureprofiledatafromdnsseqdifferentialnucleasesensitivitymappingoffourreferencetissuesofb73maizezeamaysl
AT thompsonwilliamf chromatinstructureprofiledatafromdnsseqdifferentialnucleasesensitivitymappingoffourreferencetissuesofb73maizezeamaysl
AT hanleybowdoinlinda chromatinstructureprofiledatafromdnsseqdifferentialnucleasesensitivitymappingoffourreferencetissuesofb73maizezeamaysl
AT dennisjonathanh chromatinstructureprofiledatafromdnsseqdifferentialnucleasesensitivitymappingoffourreferencetissuesofb73maizezeamaysl
AT zhangjinfeng chromatinstructureprofiledatafromdnsseqdifferentialnucleasesensitivitymappingoffourreferencetissuesofb73maizezeamaysl
AT basshankw chromatinstructureprofiledatafromdnsseqdifferentialnucleasesensitivitymappingoffourreferencetissuesofb73maizezeamaysl

Ejemplares similares