Cargando…

MicroRNA‐17 as a promising diagnostic biomarker of gastric cancer: An investigation combining TCGA, GEO, meta‐analysis, and bioinformatics

Integrated studies of accumulated data can be performed to obtain more reliable information and more feasible measures for investigating potential diagnostic biomarkers of gastric cancer (GC) and to explore related molecular mechanisms. This study aimed to identify microRNAs involved in GC by integr...

Descripción completa

Detalles Bibliográficos
Autores principales: Hu, GaoFeng, Lv, QianWen, Yan, JiaXiu, Chen, LiJun, Du, Juan, Zhao, Ke, Xu, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6120248/
https://www.ncbi.nlm.nih.gov/pubmed/30186751
http://dx.doi.org/10.1002/2211-5463.12496
_version_ 1783352231994589184
author Hu, GaoFeng
Lv, QianWen
Yan, JiaXiu
Chen, LiJun
Du, Juan
Zhao, Ke
Xu, Wei
author_facet Hu, GaoFeng
Lv, QianWen
Yan, JiaXiu
Chen, LiJun
Du, Juan
Zhao, Ke
Xu, Wei
author_sort Hu, GaoFeng
collection PubMed
description Integrated studies of accumulated data can be performed to obtain more reliable information and more feasible measures for investigating potential diagnostic biomarkers of gastric cancer (GC) and to explore related molecular mechanisms. This study aimed to identify microRNAs involved in GC by integrating data from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus. Through our analysis, we identified hsa‐miR‐17 (miR‐17) as a suitable candidate. We performed a meta‐analysis of published studies and analyzed clinical data from TCGA to evaluate the clinical significance and diagnostic value of miR‐17 in GC. miR‐17 was found to be upregulated in GC tissues and exhibited a favorable value in diagnosing GC. In addition, we predicted that 288 target genes of miR‐17 participate in GC‐related pathways. Enrichment of Kyoto Encyclopedia of Genes and Genomes pathway, Gene Ontology analysis, and protein–protein interaction analysis of the 288 target genes of miR‐17 were also performed. Through this study, we identified possible core pathways and genes that may play an important role in GC. The possible core pathways include the cAMP, phosphoinositide‐3‐kinase–Akt, Rap1, and mitogen‐activated protein kinase signaling pathways. miR‐17 may be involved in several biological processes, including DNA template transcription, the regulation of transcription from RNA polymerase II promoters, and cell adhesion. In addition, cellular components (such as cytoplasm and plasma membrane) and molecular functions (such as protein binding and metal ion binding) also seemed to be regulated by miR‐17.
format Online
Article
Text
id pubmed-6120248
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-61202482018-09-05 MicroRNA‐17 as a promising diagnostic biomarker of gastric cancer: An investigation combining TCGA, GEO, meta‐analysis, and bioinformatics Hu, GaoFeng Lv, QianWen Yan, JiaXiu Chen, LiJun Du, Juan Zhao, Ke Xu, Wei FEBS Open Bio Research Articles Integrated studies of accumulated data can be performed to obtain more reliable information and more feasible measures for investigating potential diagnostic biomarkers of gastric cancer (GC) and to explore related molecular mechanisms. This study aimed to identify microRNAs involved in GC by integrating data from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus. Through our analysis, we identified hsa‐miR‐17 (miR‐17) as a suitable candidate. We performed a meta‐analysis of published studies and analyzed clinical data from TCGA to evaluate the clinical significance and diagnostic value of miR‐17 in GC. miR‐17 was found to be upregulated in GC tissues and exhibited a favorable value in diagnosing GC. In addition, we predicted that 288 target genes of miR‐17 participate in GC‐related pathways. Enrichment of Kyoto Encyclopedia of Genes and Genomes pathway, Gene Ontology analysis, and protein–protein interaction analysis of the 288 target genes of miR‐17 were also performed. Through this study, we identified possible core pathways and genes that may play an important role in GC. The possible core pathways include the cAMP, phosphoinositide‐3‐kinase–Akt, Rap1, and mitogen‐activated protein kinase signaling pathways. miR‐17 may be involved in several biological processes, including DNA template transcription, the regulation of transcription from RNA polymerase II promoters, and cell adhesion. In addition, cellular components (such as cytoplasm and plasma membrane) and molecular functions (such as protein binding and metal ion binding) also seemed to be regulated by miR‐17. John Wiley and Sons Inc. 2018-08-30 /pmc/articles/PMC6120248/ /pubmed/30186751 http://dx.doi.org/10.1002/2211-5463.12496 Text en © 2018 The Authors. Published by FEBS Press and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Hu, GaoFeng
Lv, QianWen
Yan, JiaXiu
Chen, LiJun
Du, Juan
Zhao, Ke
Xu, Wei
MicroRNA‐17 as a promising diagnostic biomarker of gastric cancer: An investigation combining TCGA, GEO, meta‐analysis, and bioinformatics
title MicroRNA‐17 as a promising diagnostic biomarker of gastric cancer: An investigation combining TCGA, GEO, meta‐analysis, and bioinformatics
title_full MicroRNA‐17 as a promising diagnostic biomarker of gastric cancer: An investigation combining TCGA, GEO, meta‐analysis, and bioinformatics
title_fullStr MicroRNA‐17 as a promising diagnostic biomarker of gastric cancer: An investigation combining TCGA, GEO, meta‐analysis, and bioinformatics
title_full_unstemmed MicroRNA‐17 as a promising diagnostic biomarker of gastric cancer: An investigation combining TCGA, GEO, meta‐analysis, and bioinformatics
title_short MicroRNA‐17 as a promising diagnostic biomarker of gastric cancer: An investigation combining TCGA, GEO, meta‐analysis, and bioinformatics
title_sort microrna‐17 as a promising diagnostic biomarker of gastric cancer: an investigation combining tcga, geo, meta‐analysis, and bioinformatics
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6120248/
https://www.ncbi.nlm.nih.gov/pubmed/30186751
http://dx.doi.org/10.1002/2211-5463.12496
work_keys_str_mv AT hugaofeng microrna17asapromisingdiagnosticbiomarkerofgastriccanceraninvestigationcombiningtcgageometaanalysisandbioinformatics
AT lvqianwen microrna17asapromisingdiagnosticbiomarkerofgastriccanceraninvestigationcombiningtcgageometaanalysisandbioinformatics
AT yanjiaxiu microrna17asapromisingdiagnosticbiomarkerofgastriccanceraninvestigationcombiningtcgageometaanalysisandbioinformatics
AT chenlijun microrna17asapromisingdiagnosticbiomarkerofgastriccanceraninvestigationcombiningtcgageometaanalysisandbioinformatics
AT dujuan microrna17asapromisingdiagnosticbiomarkerofgastriccanceraninvestigationcombiningtcgageometaanalysisandbioinformatics
AT zhaoke microrna17asapromisingdiagnosticbiomarkerofgastriccanceraninvestigationcombiningtcgageometaanalysisandbioinformatics
AT xuwei microrna17asapromisingdiagnosticbiomarkerofgastriccanceraninvestigationcombiningtcgageometaanalysisandbioinformatics