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Genome wide analysis of meiotic recombination in yeast: For a few SNPs more

Diploid organisms undergo meiosis to produce haploid germ cells. Crossover events during meiosis promote genetic diversity and facilitate accurate chromosome segregation. The baker's yeast Saccharomyces cerevisiae is extensively used as a model for analysis of meiotic recombination. Conventiona...

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Autores principales: Chakraborty, Parijat, Pankajam, Ajith V., Dutta, Abhishek, Nishant, Koodali T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6120447/
https://www.ncbi.nlm.nih.gov/pubmed/29934971
http://dx.doi.org/10.1002/iub.1877
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author Chakraborty, Parijat
Pankajam, Ajith V.
Dutta, Abhishek
Nishant, Koodali T.
author_facet Chakraborty, Parijat
Pankajam, Ajith V.
Dutta, Abhishek
Nishant, Koodali T.
author_sort Chakraborty, Parijat
collection PubMed
description Diploid organisms undergo meiosis to produce haploid germ cells. Crossover events during meiosis promote genetic diversity and facilitate accurate chromosome segregation. The baker's yeast Saccharomyces cerevisiae is extensively used as a model for analysis of meiotic recombination. Conventional methods for measuring recombination events in S. cerevisiae have been limited by the number and density of genetic markers. Next generation sequencing (NGS)‐based analysis of hybrid yeast genomes bearing thousands of heterozygous single nucleotide polymorphism (SNP) markers has revolutionized analysis of meiotic recombination. By facilitating analysis of marker segregation in the whole genome with unprecedented resolution, this method has resulted in the generation of high‐resolution recombination maps in wild‐type and meiotic mutants. These studies have provided novel insights into the mechanism of meiotic recombination. In this review, we discuss the methodology, challenges, insights and future prospects of using NGS‐based methods for whole genome analysis of meiotic recombination. The objective is to facilitate the use of these high through‐put sequencing methods for the analysis of meiotic recombination given their power to provide significant new insights into the process. © 2018 The Authors. IUBMB Life published by Wiley Periodicals, Inc. on behalf of International Union of Biochemistry and Molecular Biology, 70(8):743–752, 2018
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spelling pubmed-61204472018-09-05 Genome wide analysis of meiotic recombination in yeast: For a few SNPs more Chakraborty, Parijat Pankajam, Ajith V. Dutta, Abhishek Nishant, Koodali T. IUBMB Life Critical Reviews Diploid organisms undergo meiosis to produce haploid germ cells. Crossover events during meiosis promote genetic diversity and facilitate accurate chromosome segregation. The baker's yeast Saccharomyces cerevisiae is extensively used as a model for analysis of meiotic recombination. Conventional methods for measuring recombination events in S. cerevisiae have been limited by the number and density of genetic markers. Next generation sequencing (NGS)‐based analysis of hybrid yeast genomes bearing thousands of heterozygous single nucleotide polymorphism (SNP) markers has revolutionized analysis of meiotic recombination. By facilitating analysis of marker segregation in the whole genome with unprecedented resolution, this method has resulted in the generation of high‐resolution recombination maps in wild‐type and meiotic mutants. These studies have provided novel insights into the mechanism of meiotic recombination. In this review, we discuss the methodology, challenges, insights and future prospects of using NGS‐based methods for whole genome analysis of meiotic recombination. The objective is to facilitate the use of these high through‐put sequencing methods for the analysis of meiotic recombination given their power to provide significant new insights into the process. © 2018 The Authors. IUBMB Life published by Wiley Periodicals, Inc. on behalf of International Union of Biochemistry and Molecular Biology, 70(8):743–752, 2018 John Wiley & Sons, Inc. 2018-06-22 2018-08 /pmc/articles/PMC6120447/ /pubmed/29934971 http://dx.doi.org/10.1002/iub.1877 Text en © 2018 The Authors. IUBMB Life published by Wiley Periodicals, Inc. on behalf of International Union of Biochemistry and Molecular Biology This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Critical Reviews
Chakraborty, Parijat
Pankajam, Ajith V.
Dutta, Abhishek
Nishant, Koodali T.
Genome wide analysis of meiotic recombination in yeast: For a few SNPs more
title Genome wide analysis of meiotic recombination in yeast: For a few SNPs more
title_full Genome wide analysis of meiotic recombination in yeast: For a few SNPs more
title_fullStr Genome wide analysis of meiotic recombination in yeast: For a few SNPs more
title_full_unstemmed Genome wide analysis of meiotic recombination in yeast: For a few SNPs more
title_short Genome wide analysis of meiotic recombination in yeast: For a few SNPs more
title_sort genome wide analysis of meiotic recombination in yeast: for a few snps more
topic Critical Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6120447/
https://www.ncbi.nlm.nih.gov/pubmed/29934971
http://dx.doi.org/10.1002/iub.1877
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