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Realizing the potential of blockchain technologies in genomics

Genomics data introduce a substantial computational burden as well as data privacy and ownership issues. Data sets generated by high-throughput sequencing platforms require immense amounts of computational resources to align to reference genomes and to call and annotate genomic variants. This proble...

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Autores principales: Ozercan, Halil Ibrahim, Ileri, Atalay Mert, Ayday, Erman, Alkan, Can
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6120626/
https://www.ncbi.nlm.nih.gov/pubmed/30076130
http://dx.doi.org/10.1101/gr.207464.116
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author Ozercan, Halil Ibrahim
Ileri, Atalay Mert
Ayday, Erman
Alkan, Can
author_facet Ozercan, Halil Ibrahim
Ileri, Atalay Mert
Ayday, Erman
Alkan, Can
author_sort Ozercan, Halil Ibrahim
collection PubMed
description Genomics data introduce a substantial computational burden as well as data privacy and ownership issues. Data sets generated by high-throughput sequencing platforms require immense amounts of computational resources to align to reference genomes and to call and annotate genomic variants. This problem is even more pronounced if reanalysis is needed for new versions of reference genomes, which may impose high loads to existing computational infrastructures. Additionally, after the compute-intensive analyses are completed, the results are either kept in centralized repositories with access control, or distributed among stakeholders using standard file transfer protocols. This imposes two main problems: (1) Centralized servers become gatekeepers of the data, essentially acting as an unnecessary mediator between the actual data owners and data users; and (2) servers may create single points of failure both in terms of service availability and data privacy. Therefore, there is a need for secure and decentralized platforms for data distribution with user-level data governance. A new technology, blockchain, may help ameliorate some of these problems. In broad terms, the blockchain technology enables decentralized, immutable, incorruptible public ledgers. In this Perspective, we aim to introduce current developments toward using blockchain to address several problems in omics, and to provide an outlook of possible future implications of the blockchain technology to life sciences.
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spelling pubmed-61206262018-09-05 Realizing the potential of blockchain technologies in genomics Ozercan, Halil Ibrahim Ileri, Atalay Mert Ayday, Erman Alkan, Can Genome Res Perspective Genomics data introduce a substantial computational burden as well as data privacy and ownership issues. Data sets generated by high-throughput sequencing platforms require immense amounts of computational resources to align to reference genomes and to call and annotate genomic variants. This problem is even more pronounced if reanalysis is needed for new versions of reference genomes, which may impose high loads to existing computational infrastructures. Additionally, after the compute-intensive analyses are completed, the results are either kept in centralized repositories with access control, or distributed among stakeholders using standard file transfer protocols. This imposes two main problems: (1) Centralized servers become gatekeepers of the data, essentially acting as an unnecessary mediator between the actual data owners and data users; and (2) servers may create single points of failure both in terms of service availability and data privacy. Therefore, there is a need for secure and decentralized platforms for data distribution with user-level data governance. A new technology, blockchain, may help ameliorate some of these problems. In broad terms, the blockchain technology enables decentralized, immutable, incorruptible public ledgers. In this Perspective, we aim to introduce current developments toward using blockchain to address several problems in omics, and to provide an outlook of possible future implications of the blockchain technology to life sciences. Cold Spring Harbor Laboratory Press 2018-09 /pmc/articles/PMC6120626/ /pubmed/30076130 http://dx.doi.org/10.1101/gr.207464.116 Text en © 2018 Ozercan et al.; Published by Cold Spring Harbor Laboratory Press http://creativecommons.org/licenses/by-nc/4.0/ This article, published in Genome Research, is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.
spellingShingle Perspective
Ozercan, Halil Ibrahim
Ileri, Atalay Mert
Ayday, Erman
Alkan, Can
Realizing the potential of blockchain technologies in genomics
title Realizing the potential of blockchain technologies in genomics
title_full Realizing the potential of blockchain technologies in genomics
title_fullStr Realizing the potential of blockchain technologies in genomics
title_full_unstemmed Realizing the potential of blockchain technologies in genomics
title_short Realizing the potential of blockchain technologies in genomics
title_sort realizing the potential of blockchain technologies in genomics
topic Perspective
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6120626/
https://www.ncbi.nlm.nih.gov/pubmed/30076130
http://dx.doi.org/10.1101/gr.207464.116
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