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A note on measuring natural selection on principal component scores
Measuring natural selection through the use of multiple regression has transformed our understanding of selection, although the methods used remain sensitive to the effects of multicollinearity due to highly correlated traits. While measuring selection on principal component (PC) scores is an appare...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6121829/ https://www.ncbi.nlm.nih.gov/pubmed/30283681 http://dx.doi.org/10.1002/evl3.63 |
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author | Chong, Veronica K. Fung, Hannah F. Stinchcombe, John R. |
author_facet | Chong, Veronica K. Fung, Hannah F. Stinchcombe, John R. |
author_sort | Chong, Veronica K. |
collection | PubMed |
description | Measuring natural selection through the use of multiple regression has transformed our understanding of selection, although the methods used remain sensitive to the effects of multicollinearity due to highly correlated traits. While measuring selection on principal component (PC) scores is an apparent solution to this challenge, this approach has been heavily criticized due to difficulties in interpretation and relating PC axes back to the original traits. We describe and illustrate how to transform selection gradients for PC scores back into selection gradients for the original traits, addressing issues of multicollinearity and biological interpretation. In addition to reducing multicollinearity, we suggest that this method may have promise for measuring selection on high‐dimensional data such as volatiles or gene expression traits. We demonstrate this approach with empirical data and examples from the literature, highlighting how selection estimates for PC scores can be interpreted while reducing the consequences of multicollinearity |
format | Online Article Text |
id | pubmed-6121829 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-61218292018-10-03 A note on measuring natural selection on principal component scores Chong, Veronica K. Fung, Hannah F. Stinchcombe, John R. Evol Lett Comments and Opinions Measuring natural selection through the use of multiple regression has transformed our understanding of selection, although the methods used remain sensitive to the effects of multicollinearity due to highly correlated traits. While measuring selection on principal component (PC) scores is an apparent solution to this challenge, this approach has been heavily criticized due to difficulties in interpretation and relating PC axes back to the original traits. We describe and illustrate how to transform selection gradients for PC scores back into selection gradients for the original traits, addressing issues of multicollinearity and biological interpretation. In addition to reducing multicollinearity, we suggest that this method may have promise for measuring selection on high‐dimensional data such as volatiles or gene expression traits. We demonstrate this approach with empirical data and examples from the literature, highlighting how selection estimates for PC scores can be interpreted while reducing the consequences of multicollinearity John Wiley and Sons Inc. 2018-06-21 /pmc/articles/PMC6121829/ /pubmed/30283681 http://dx.doi.org/10.1002/evl3.63 Text en © 2018 The Author(s). Evolution Letters published by Wiley Periodicals, Inc. on behalf of Society for the Study of Evolution (SSE) and European Society for Evolutionary Biology (ESEB). This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Comments and Opinions Chong, Veronica K. Fung, Hannah F. Stinchcombe, John R. A note on measuring natural selection on principal component scores |
title | A note on measuring natural selection on principal component scores |
title_full | A note on measuring natural selection on principal component scores |
title_fullStr | A note on measuring natural selection on principal component scores |
title_full_unstemmed | A note on measuring natural selection on principal component scores |
title_short | A note on measuring natural selection on principal component scores |
title_sort | note on measuring natural selection on principal component scores |
topic | Comments and Opinions |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6121829/ https://www.ncbi.nlm.nih.gov/pubmed/30283681 http://dx.doi.org/10.1002/evl3.63 |
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