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A note on measuring natural selection on principal component scores

Measuring natural selection through the use of multiple regression has transformed our understanding of selection, although the methods used remain sensitive to the effects of multicollinearity due to highly correlated traits. While measuring selection on principal component (PC) scores is an appare...

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Detalles Bibliográficos
Autores principales: Chong, Veronica K., Fung, Hannah F., Stinchcombe, John R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6121829/
https://www.ncbi.nlm.nih.gov/pubmed/30283681
http://dx.doi.org/10.1002/evl3.63
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author Chong, Veronica K.
Fung, Hannah F.
Stinchcombe, John R.
author_facet Chong, Veronica K.
Fung, Hannah F.
Stinchcombe, John R.
author_sort Chong, Veronica K.
collection PubMed
description Measuring natural selection through the use of multiple regression has transformed our understanding of selection, although the methods used remain sensitive to the effects of multicollinearity due to highly correlated traits. While measuring selection on principal component (PC) scores is an apparent solution to this challenge, this approach has been heavily criticized due to difficulties in interpretation and relating PC axes back to the original traits. We describe and illustrate how to transform selection gradients for PC scores back into selection gradients for the original traits, addressing issues of multicollinearity and biological interpretation. In addition to reducing multicollinearity, we suggest that this method may have promise for measuring selection on high‐dimensional data such as volatiles or gene expression traits. We demonstrate this approach with empirical data and examples from the literature, highlighting how selection estimates for PC scores can be interpreted while reducing the consequences of multicollinearity
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spelling pubmed-61218292018-10-03 A note on measuring natural selection on principal component scores Chong, Veronica K. Fung, Hannah F. Stinchcombe, John R. Evol Lett Comments and Opinions Measuring natural selection through the use of multiple regression has transformed our understanding of selection, although the methods used remain sensitive to the effects of multicollinearity due to highly correlated traits. While measuring selection on principal component (PC) scores is an apparent solution to this challenge, this approach has been heavily criticized due to difficulties in interpretation and relating PC axes back to the original traits. We describe and illustrate how to transform selection gradients for PC scores back into selection gradients for the original traits, addressing issues of multicollinearity and biological interpretation. In addition to reducing multicollinearity, we suggest that this method may have promise for measuring selection on high‐dimensional data such as volatiles or gene expression traits. We demonstrate this approach with empirical data and examples from the literature, highlighting how selection estimates for PC scores can be interpreted while reducing the consequences of multicollinearity John Wiley and Sons Inc. 2018-06-21 /pmc/articles/PMC6121829/ /pubmed/30283681 http://dx.doi.org/10.1002/evl3.63 Text en © 2018 The Author(s). Evolution Letters published by Wiley Periodicals, Inc. on behalf of Society for the Study of Evolution (SSE) and European Society for Evolutionary Biology (ESEB). This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Comments and Opinions
Chong, Veronica K.
Fung, Hannah F.
Stinchcombe, John R.
A note on measuring natural selection on principal component scores
title A note on measuring natural selection on principal component scores
title_full A note on measuring natural selection on principal component scores
title_fullStr A note on measuring natural selection on principal component scores
title_full_unstemmed A note on measuring natural selection on principal component scores
title_short A note on measuring natural selection on principal component scores
title_sort note on measuring natural selection on principal component scores
topic Comments and Opinions
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6121829/
https://www.ncbi.nlm.nih.gov/pubmed/30283681
http://dx.doi.org/10.1002/evl3.63
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