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Bond orders for intermolecular interactions in crystals: charge transfer, ionicity and the effect on intramolecular bonds
The question of whether intermolecular interactions in crystals originate from localized atom⋯atom interactions or as a result of holistic molecule⋯molecule close packing is a matter of continuing debate. In this context, the newly introduced Roby–Gould bond indices are reported for intermolecular ‘...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6126646/ https://www.ncbi.nlm.nih.gov/pubmed/30224966 http://dx.doi.org/10.1107/S2052252518010758 |
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author | Alhameedi, Khidhir Karton, Amir Jayatilaka, Dylan Thomas, Sajesh P. |
author_facet | Alhameedi, Khidhir Karton, Amir Jayatilaka, Dylan Thomas, Sajesh P. |
author_sort | Alhameedi, Khidhir |
collection | PubMed |
description | The question of whether intermolecular interactions in crystals originate from localized atom⋯atom interactions or as a result of holistic molecule⋯molecule close packing is a matter of continuing debate. In this context, the newly introduced Roby–Gould bond indices are reported for intermolecular ‘σ-hole’ interactions, such as halogen bonding and chalcogen bonding, and compared with those for hydrogen bonds. A series of 97 crystal systems exhibiting these interaction motifs obtained from the Cambridge Structural Database (CSD) has been analysed. In contrast with conventional bond-order estimations, the new method separately estimates the ionic and covalent bond indices for atom⋯atom and molecule⋯molecule bond orders, which shed light on the nature of these interactions. A consistent trend in charge transfer from halogen/chalcogen bond-acceptor to bond-donor groups has been found in these intermolecular interaction regions via Hirshfeld atomic partitioning of the electron populations. These results, along with the ‘conservation of bond orders’ tested in the interaction regions, establish the significant role of localized atom⋯atom interactions in the formation of these intermolecular binding motifs. |
format | Online Article Text |
id | pubmed-6126646 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-61266462018-09-17 Bond orders for intermolecular interactions in crystals: charge transfer, ionicity and the effect on intramolecular bonds Alhameedi, Khidhir Karton, Amir Jayatilaka, Dylan Thomas, Sajesh P. IUCrJ Research Papers The question of whether intermolecular interactions in crystals originate from localized atom⋯atom interactions or as a result of holistic molecule⋯molecule close packing is a matter of continuing debate. In this context, the newly introduced Roby–Gould bond indices are reported for intermolecular ‘σ-hole’ interactions, such as halogen bonding and chalcogen bonding, and compared with those for hydrogen bonds. A series of 97 crystal systems exhibiting these interaction motifs obtained from the Cambridge Structural Database (CSD) has been analysed. In contrast with conventional bond-order estimations, the new method separately estimates the ionic and covalent bond indices for atom⋯atom and molecule⋯molecule bond orders, which shed light on the nature of these interactions. A consistent trend in charge transfer from halogen/chalcogen bond-acceptor to bond-donor groups has been found in these intermolecular interaction regions via Hirshfeld atomic partitioning of the electron populations. These results, along with the ‘conservation of bond orders’ tested in the interaction regions, establish the significant role of localized atom⋯atom interactions in the formation of these intermolecular binding motifs. International Union of Crystallography 2018-08-29 /pmc/articles/PMC6126646/ /pubmed/30224966 http://dx.doi.org/10.1107/S2052252518010758 Text en © Khidhir Alhameedi et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Research Papers Alhameedi, Khidhir Karton, Amir Jayatilaka, Dylan Thomas, Sajesh P. Bond orders for intermolecular interactions in crystals: charge transfer, ionicity and the effect on intramolecular bonds |
title | Bond orders for intermolecular interactions in crystals: charge transfer, ionicity and the effect on intramolecular bonds |
title_full | Bond orders for intermolecular interactions in crystals: charge transfer, ionicity and the effect on intramolecular bonds |
title_fullStr | Bond orders for intermolecular interactions in crystals: charge transfer, ionicity and the effect on intramolecular bonds |
title_full_unstemmed | Bond orders for intermolecular interactions in crystals: charge transfer, ionicity and the effect on intramolecular bonds |
title_short | Bond orders for intermolecular interactions in crystals: charge transfer, ionicity and the effect on intramolecular bonds |
title_sort | bond orders for intermolecular interactions in crystals: charge transfer, ionicity and the effect on intramolecular bonds |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6126646/ https://www.ncbi.nlm.nih.gov/pubmed/30224966 http://dx.doi.org/10.1107/S2052252518010758 |
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