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Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites

With antimicrobial resistance on the rise, the discovery of new compounds with novel structural scaffolds exhibiting antimicrobial properties has become an important area of research. Such compounds can serve as starting points for the development of new antimicrobials. In this report, we present th...

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Detalles Bibliográficos
Autores principales: Rehman, Zahid ur, Alam, Intikhab, Kamau, Allan Anthony, Bajic, Vladimir B., Leiknes, TorOve
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6127377/
https://www.ncbi.nlm.nih.gov/pubmed/30197874
http://dx.doi.org/10.1016/j.btre.2018.e00278
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author Rehman, Zahid ur
Alam, Intikhab
Kamau, Allan Anthony
Bajic, Vladimir B.
Leiknes, TorOve
author_facet Rehman, Zahid ur
Alam, Intikhab
Kamau, Allan Anthony
Bajic, Vladimir B.
Leiknes, TorOve
author_sort Rehman, Zahid ur
collection PubMed
description With antimicrobial resistance on the rise, the discovery of new compounds with novel structural scaffolds exhibiting antimicrobial properties has become an important area of research. Such compounds can serve as starting points for the development of new antimicrobials. In this report, we present the draft genome sequence of the Zooshikella ganghwensis strain VG4, isolated from Red Sea sediments, that produces metabolites with antimicrobial properties. A genomic analysis reveals that it carries at least five gene clusters that have the potential to direct biosynthesis of bioactive secondary metabolites such as polyketides and nonribosomal peptides. By using in-silico approaches, we predict the structure of these metabolites.
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spelling pubmed-61273772018-09-07 Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites Rehman, Zahid ur Alam, Intikhab Kamau, Allan Anthony Bajic, Vladimir B. Leiknes, TorOve Biotechnol Rep (Amst) Article With antimicrobial resistance on the rise, the discovery of new compounds with novel structural scaffolds exhibiting antimicrobial properties has become an important area of research. Such compounds can serve as starting points for the development of new antimicrobials. In this report, we present the draft genome sequence of the Zooshikella ganghwensis strain VG4, isolated from Red Sea sediments, that produces metabolites with antimicrobial properties. A genomic analysis reveals that it carries at least five gene clusters that have the potential to direct biosynthesis of bioactive secondary metabolites such as polyketides and nonribosomal peptides. By using in-silico approaches, we predict the structure of these metabolites. Elsevier 2018-08-24 /pmc/articles/PMC6127377/ /pubmed/30197874 http://dx.doi.org/10.1016/j.btre.2018.e00278 Text en © 2018 The Author http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Rehman, Zahid ur
Alam, Intikhab
Kamau, Allan Anthony
Bajic, Vladimir B.
Leiknes, TorOve
Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites
title Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites
title_full Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites
title_fullStr Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites
title_full_unstemmed Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites
title_short Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites
title_sort genome sequence analysis of zooshikella ganghwensis strain vg4 and its potential for the synthesis of antimicrobial metabolites
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6127377/
https://www.ncbi.nlm.nih.gov/pubmed/30197874
http://dx.doi.org/10.1016/j.btre.2018.e00278
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