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Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites
With antimicrobial resistance on the rise, the discovery of new compounds with novel structural scaffolds exhibiting antimicrobial properties has become an important area of research. Such compounds can serve as starting points for the development of new antimicrobials. In this report, we present th...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6127377/ https://www.ncbi.nlm.nih.gov/pubmed/30197874 http://dx.doi.org/10.1016/j.btre.2018.e00278 |
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author | Rehman, Zahid ur Alam, Intikhab Kamau, Allan Anthony Bajic, Vladimir B. Leiknes, TorOve |
author_facet | Rehman, Zahid ur Alam, Intikhab Kamau, Allan Anthony Bajic, Vladimir B. Leiknes, TorOve |
author_sort | Rehman, Zahid ur |
collection | PubMed |
description | With antimicrobial resistance on the rise, the discovery of new compounds with novel structural scaffolds exhibiting antimicrobial properties has become an important area of research. Such compounds can serve as starting points for the development of new antimicrobials. In this report, we present the draft genome sequence of the Zooshikella ganghwensis strain VG4, isolated from Red Sea sediments, that produces metabolites with antimicrobial properties. A genomic analysis reveals that it carries at least five gene clusters that have the potential to direct biosynthesis of bioactive secondary metabolites such as polyketides and nonribosomal peptides. By using in-silico approaches, we predict the structure of these metabolites. |
format | Online Article Text |
id | pubmed-6127377 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-61273772018-09-07 Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites Rehman, Zahid ur Alam, Intikhab Kamau, Allan Anthony Bajic, Vladimir B. Leiknes, TorOve Biotechnol Rep (Amst) Article With antimicrobial resistance on the rise, the discovery of new compounds with novel structural scaffolds exhibiting antimicrobial properties has become an important area of research. Such compounds can serve as starting points for the development of new antimicrobials. In this report, we present the draft genome sequence of the Zooshikella ganghwensis strain VG4, isolated from Red Sea sediments, that produces metabolites with antimicrobial properties. A genomic analysis reveals that it carries at least five gene clusters that have the potential to direct biosynthesis of bioactive secondary metabolites such as polyketides and nonribosomal peptides. By using in-silico approaches, we predict the structure of these metabolites. Elsevier 2018-08-24 /pmc/articles/PMC6127377/ /pubmed/30197874 http://dx.doi.org/10.1016/j.btre.2018.e00278 Text en © 2018 The Author http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Rehman, Zahid ur Alam, Intikhab Kamau, Allan Anthony Bajic, Vladimir B. Leiknes, TorOve Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites |
title | Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites |
title_full | Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites |
title_fullStr | Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites |
title_full_unstemmed | Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites |
title_short | Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites |
title_sort | genome sequence analysis of zooshikella ganghwensis strain vg4 and its potential for the synthesis of antimicrobial metabolites |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6127377/ https://www.ncbi.nlm.nih.gov/pubmed/30197874 http://dx.doi.org/10.1016/j.btre.2018.e00278 |
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