Cargando…

Prioritizing candidate genes post-GWAS using multiple sources of data for mastitis resistance in dairy cattle

BACKGROUND: Improving resistance to mastitis, one of the costliest diseases in dairy production, has become an important objective in dairy cattle breeding. However, mastitis resistance is influenced by many genes involved in multiple processes, including the response to infection, inflammation, and...

Descripción completa

Detalles Bibliográficos
Autores principales:	Cai, Zexi, Guldbrandtsen, Bernt, Lund, Mogens Sandø, Sahana, Goutam
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6127918/ https://www.ncbi.nlm.nih.gov/pubmed/30189836 http://dx.doi.org/10.1186/s12864-018-5050-x

Ejemplares similares

Prioritizing candidate genes for fertility in dairy cows using gene-based analysis, functional annotation and differential gene expression
por: Cai, Zexi, et al.
Publicado: (2019)

Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle
por: Cai, Zexi, et al.
Publicado: (2018)

Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle
por: Cai, Zexi, et al.
Publicado: (2019)

Retraction Note: Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle
por: Cai, Zexi, et al.
Publicado: (2018)

Weighting sequence variants based on their annotation increases the power of genome-wide association studies in dairy cattle
por: Cai, Zexi, et al.
Publicado: (2019)

Distinguishing pleiotropy from linked QTL between milk production traits and mastitis resistance in Nordic Holstein cattle
por: Cai, Zexi, et al.
Publicado: (2020)

Integrating Sequence-based GWAS and RNA-Seq Provides Novel Insights into the Genetic Basis of Mastitis and Milk Production in Dairy Cattle
por: Fang, Lingzhao, et al.
Publicado: (2017)

Human-Mediated Introgression of Haplotypes in a Modern Dairy Cattle Breed
por: Zhang, Qianqian, et al.
Publicado: (2018)

Contribution of rare and low-frequency whole-genome sequence variants to complex traits variation in dairy cattle
por: Zhang, Qianqian, et al.
Publicado: (2017)

Impact of rare and low-frequency sequence variants on reliability of genomic prediction in dairy cattle
por: Zhang, Qianqian, et al.
Publicado: (2018)

Analyzes of genome-wide association follow-up study for calving traits in dairy cattle
por: Höglund, Johanna K, et al.
Publicado: (2012)

Validation of associations for female fertility traits in Nordic Holstein, Nordic Red and Jersey dairy cattle
por: Höglund, Johanna K, et al.
Publicado: (2014)

SNP markers associated with body size and pelt length in American mink (Neovison vison)
por: Cai, Zexi, et al.
Publicado: (2018)

Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle
por: Brøndum, Rasmus Froberg, et al.
Publicado: (2014)

Genome-wide mapping of large deletions and their population-genetic properties in dairy cattle
por: Mesbah-Uddin, Md, et al.
Publicado: (2018)

Novel Harmful Recessive Haplotypes Identified for Fertility Traits in Nordic Holstein Cattle
por: Sahana, Goutam, et al.
Publicado: (2013)

A Meta-Analysis Including Pre-selected Sequence Variants Associated With Seven Traits in Three French Dairy Cattle Populations
por: Marete, Andrew G., et al.
Publicado: (2018)

Local Genealogies in a Linear Mixed Model for Genome-Wide Association Mapping in Complex Pedigreed Populations
por: Sahana, Goutam, et al.
Publicado: (2011)

Loci associated with adult stature also affect calf birth survival in cattle
por: Sahana, Goutam, et al.
Publicado: (2015)

Runs of homozygosity and distribution of functional variants in the cattle genome
por: Zhang, Qianqian, et al.
Publicado: (2015)

Fine mapping QTL for female fertility on BTA04 and BTA13 in dairy cattle using HD SNP and sequence data
por: Höglund, Johanna K, et al.
Publicado: (2014)

A 0.5-Mbp deletion on bovine chromosome 23 is a strong candidate for stillbirth in Nordic Red cattle
por: Sahana, Goutam, et al.
Publicado: (2016)

Genome-wide association study for female fertility in Nordic Red cattle
por: Höglund, Johanna K., et al.
Publicado: (2015)

Bayesian modeling reveals host genetics associated with rumen microbiota jointly influence methane emission in dairy cows
por: Zhang, Qianqian, et al.
Publicado: (2020)

Impact of kinship matrices on genetic gain and inbreeding with optimum contribution selection in a genomic dairy cattle breeding program
por: Gautason, Egill, et al.
Publicado: (2023)

Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds
por: Zhang, Qianqian, et al.
Publicado: (2015)

Exploring the genetic architecture and improving genomic prediction accuracy for mastitis and milk production traits in dairy cattle by mapping variants to hepatic transcriptomic regions responsive to intra-mammary infection
por: Fang, Lingzhao, et al.
Publicado: (2017)

The first draft reference genome of the American mink (Neovison vison)
por: Cai, Zexi, et al.
Publicado: (2017)

The efficiency of mapping of quantitative trait loci using cofactor analysis in half-sib design
por: Sahana, Goutam, et al.
Publicado: (2006)

Comparison of gene-based rare variant association mapping methods for quantitative traits in a bovine population with complex familial relationships
por: Zhang, Qianqian, et al.
Publicado: (2016)

Whole genome sequence and de novo assembly revealed genomic architecture of Indian Mithun (Bos frontalis)
por: Mukherjee, Sabyasachi, et al.
Publicado: (2019)

Identification of genomic regions associated with female fertility in Danish Jersey using whole genome sequence data
por: Höglund, Johanna K., et al.
Publicado: (2015)

Large-scale association study on daily weight gain in pigs reveals overlap of genetic factors for growth in humans
por: Cai, Zexi, et al.
Publicado: (2022)

MeSCoT: the tool for quantitative trait simulation through the mechanistic modeling of genes’ regulatory interactions
por: Milkevych, Viktor, et al.
Publicado: (2021)

Using Sequence Variants in Linkage Disequilibrium with Causative Mutations to Improve Across-Breed Prediction in Dairy Cattle: A Simulation Study
por: van den Berg, Irene, et al.
Publicado: (2016)

Use of biological priors enhances understanding of genetic architecture and genomic prediction of complex traits within and between dairy cattle breeds
por: Fang, Lingzhao, et al.
Publicado: (2017)

Association analysis for udder health based on SNP-panel and sequence data in Danish Holsteins
por: Wu, Xiaoping, et al.
Publicado: (2015)

MicroRNA-guided prioritization of genome-wide association signals reveals the importance of microRNA-target gene networks for complex traits in cattle
por: Fang, Lingzhao, et al.
Publicado: (2018)

A 660-Kb Deletion with Antagonistic Effects on Fertility and Milk Production Segregates at High Frequency in Nordic Red Cattle: Additional Evidence for the Common Occurrence of Balancing Selection in Livestock
por: Kadri, Naveen Kumar, et al.
Publicado: (2014)

Weighted single-step genomic best linear unbiased prediction integrating variants selected from sequencing data by association and bioinformatics analyses
por: Liu, Aoxing, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_cfn12bb3q7vgbva1qr9g3v9h8p