Cargando…

Identification of differentially expressed genes by means of outlier detection

BACKGROUND: An important issue in microarray data is to select, from thousands of genes, a small number of informative differentially expressed (DE) genes which may be key elements for a disease. If each gene is analyzed individually, there is a big number of hypotheses to test and a multiple compar...

Descripción completa

Detalles Bibliográficos
Autores principales:	Irigoien, Itziar, Arenas, Concepción
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2018
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6131896/ https://www.ncbi.nlm.nih.gov/pubmed/30200879 http://dx.doi.org/10.1186/s12859-018-2318-8

Ejemplares similares

LSOSS: Detection of Cancer Outlier Differential Gene Expression
por: Wang, Yupeng, et al.
Publicado: (2010)

ICGE: an R package for detecting relevant clusters and atypical units in gene expression
por: Irigoien, Itziar, et al.
Publicado: (2012)

ORdensity: user-friendly R package to identify differentially expressed genes
por: Martínez-Otzeta, José María, et al.
Publicado: (2020)

Prediction of heterogeneous differential genes by detecting outliers to a Gaussian tight cluster
por: Yang, Zihua, et al.
Publicado: (2013)

Robust volcano plot: identification of differential metabolites in the presence of outliers
por: Kumar, Nishith, et al.
Publicado: (2018)

Stability of gene contributions and identification of outliers in multivariate analysis of microarray data
por: Baty, Florent, et al.
Publicado: (2008)

CLOUD: a non-parametric detection test for microbiome outliers
por: Montassier, Emmanuel, et al.
Publicado: (2018)

Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments
por: Schulz-Trieglaff, Ole, et al.
Publicado: (2009)

Towards Application of One-Class Classification Methods to Medical Data
por: Irigoien, Itziar, et al.
Publicado: (2014)

Simultaneous feature selection and outlier detection with optimality guarantees
por: Insolia, Luca, et al.
Publicado: (2021)

Shape based kinetic outlier detection in real-time PCR
por: Sisti, Davide, et al.
Publicado: (2010)

Ranking cancer drivers via betweenness-based outlier detection and random walks
por: Erten, Cesim, et al.
Publicado: (2021)

Automated multigroup outlier identification in molecular high-throughput data using bagplots and gemplots
por: Kruppa, Jochen, et al.
Publicado: (2017)

Integrating mean and variance heterogeneities to identify differentially expressed genes
por: Ouyang, Weiwei, et al.
Publicado: (2016)

Thresher: determining the number of clusters while removing outliers
por: Wang, Min, et al.
Publicado: (2018)

Enabling network inference methods to handle missing data and outliers
por: Folch-Fortuny, Abel, et al.
Publicado: (2015)

Identification of outliers
por: Hawkins, D M
Publicado: (1980)

Detecting multivariate differentially expressed genes
por: Nilsson, Roland, et al.
Publicado: (2007)

Accounting for regional background and population size in the detection of spatial clusters and outliers using geostatistical filtering and spatial neutral models: the case of lung cancer in Long Island, New York
por: Goovaerts, Pierre, et al.
Publicado: (2004)

Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements
por: Cooke, Emma J, et al.
Publicado: (2011)

Detecting outliers when fitting data with nonlinear regression – a new method based on robust nonlinear regression and the false discovery rate
por: Motulsky, Harvey J, et al.
Publicado: (2006)

Detecting Outlier Microarray Arrays by Correlation and Percentage of Outliers Spots
por: Yang, Song, et al.
Publicado: (2007)

Identification of Differentially Evolved Genes: An Alternative Approach to Detection of Accelerated Molecular Evolution from Genome-Wide Comparative Data
por: Kim, Kyu-Won, et al.
Publicado: (2013)

A novel joint analysis framework improves identification of differentially expressed genes in cross disease transcriptomic analysis
por: Qin, Wenyi, et al.
Publicado: (2018)

Rough sets for in silico identification of differentially expressed miRNAs
por: Paul, Sushmita, et al.
Publicado: (2013)

ZODET: Software for the Identification, Analysis and Visualisation of Outlier Genes in Microarray Expression Data
por: Roden, Daniel L., et al.
Publicado: (2014)

A comparison on effects of normalisations in the detection of differentially expressed genes
por: Chiogna, Monica, et al.
Publicado: (2009)

Fluctuation-based outlier detection
por: Du, Xusheng, et al.
Publicado: (2023)

On Differential Gene Expression Using RNA-Seq Data
por: Lee, Juhee, et al.
Publicado: (2011)

Outlier detection in BLAST hits
por: Shah, Nidhi, et al.
Publicado: (2018)

Subgroup and outlier detection analysis
por: Wu, Gang, et al.
Publicado: (2013)

Outlier detection using autoencoders
por: Lyudchik, Olga
Publicado: (2016)

Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arrays
por: Hess, Ann, et al.
Publicado: (2007)

Improving detection of differentially expressed gene sets by applying cluster enrichment analysis to Gene Ontology
por: Xu, Tao, et al.
Publicado: (2009)

TTCA: an R package for the identification of differentially expressed genes in time course microarray data
por: Albrecht, Marco, et al.
Publicado: (2017)

Outlier-Detection Methodology for Structural Identification Using Sparse Static Measurements
por: Proverbio, Marco, et al.
Publicado: (2018)

Normal uniform mixture differential gene expression detection for cDNA microarrays
por: Dean, Nema, et al.
Publicado: (2005)

Detecting Cancer Outlier Genes with Potential Rearrangement Using Gene Expression Data and Biological Networks
por: Alshalalfa, Mohammed, et al.
Publicado: (2012)

Incremental genetic K-means algorithm and its application in gene expression data analysis
por: Lu, Yi, et al.
Publicado: (2004)

A power law global error model for the identification of differentially expressed genes in microarray data
por: Pavelka, Norman, et al.
Publicado: (2004)

Cannot write session to /tmp/vufind_sessions/sess_l5ehvkpqr2v397jr4a5o1shspp