Genome sequence of Rhizomucor pusillus FCH 5.7, a thermophilic zygomycete involved in plant biomass degradation harbouring putative GH9 endoglucanases

We report here the annotated draft genome sequence of the thermophilic zygomycete Rhizomucor pusillus strain FCH 5.7, isolated from compost soil in Vietnam. The genome assembly contains 25.59 Mb with an overall GC content of 44.95%, and comprises 10,898 protein coding genes. Genes encoding putative...

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Autores principales: Hüttner, Silvia, Granchi, Zoraide, Nguyen, Thanh Thuy, van Pelt, Sake, Larsbrink, Johan, Thanh, Vu Nguyen, Olsson, Lisbeth
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6132078/
https://www.ncbi.nlm.nih.gov/pubmed/30211016
http://dx.doi.org/10.1016/j.btre.2018.e00279
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author Hüttner, Silvia
Granchi, Zoraide
Nguyen, Thanh Thuy
van Pelt, Sake
Larsbrink, Johan
Thanh, Vu Nguyen
Olsson, Lisbeth
author_facet Hüttner, Silvia
Granchi, Zoraide
Nguyen, Thanh Thuy
van Pelt, Sake
Larsbrink, Johan
Thanh, Vu Nguyen
Olsson, Lisbeth
author_sort Hüttner, Silvia
collection PubMed
description We report here the annotated draft genome sequence of the thermophilic zygomycete Rhizomucor pusillus strain FCH 5.7, isolated from compost soil in Vietnam. The genome assembly contains 25.59 Mb with an overall GC content of 44.95%, and comprises 10,898 protein coding genes. Genes encoding putative cellulose-, xylan- and chitin-degrading proteins were identified, including two putative endoglucanases (EC 3.2.1.4) from glycoside hydrolase family 9, which have so far been mostly assigned to bacteria and plants.
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spelling pubmed-61320782018-09-12 Genome sequence of Rhizomucor pusillus FCH 5.7, a thermophilic zygomycete involved in plant biomass degradation harbouring putative GH9 endoglucanases Hüttner, Silvia Granchi, Zoraide Nguyen, Thanh Thuy van Pelt, Sake Larsbrink, Johan Thanh, Vu Nguyen Olsson, Lisbeth Biotechnol Rep (Amst) Article We report here the annotated draft genome sequence of the thermophilic zygomycete Rhizomucor pusillus strain FCH 5.7, isolated from compost soil in Vietnam. The genome assembly contains 25.59 Mb with an overall GC content of 44.95%, and comprises 10,898 protein coding genes. Genes encoding putative cellulose-, xylan- and chitin-degrading proteins were identified, including two putative endoglucanases (EC 3.2.1.4) from glycoside hydrolase family 9, which have so far been mostly assigned to bacteria and plants. Elsevier 2018-08-31 /pmc/articles/PMC6132078/ /pubmed/30211016 http://dx.doi.org/10.1016/j.btre.2018.e00279 Text en © 2018 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Hüttner, Silvia
Granchi, Zoraide
Nguyen, Thanh Thuy
van Pelt, Sake
Larsbrink, Johan
Thanh, Vu Nguyen
Olsson, Lisbeth
Genome sequence of Rhizomucor pusillus FCH 5.7, a thermophilic zygomycete involved in plant biomass degradation harbouring putative GH9 endoglucanases
title Genome sequence of Rhizomucor pusillus FCH 5.7, a thermophilic zygomycete involved in plant biomass degradation harbouring putative GH9 endoglucanases
title_full Genome sequence of Rhizomucor pusillus FCH 5.7, a thermophilic zygomycete involved in plant biomass degradation harbouring putative GH9 endoglucanases
title_fullStr Genome sequence of Rhizomucor pusillus FCH 5.7, a thermophilic zygomycete involved in plant biomass degradation harbouring putative GH9 endoglucanases
title_full_unstemmed Genome sequence of Rhizomucor pusillus FCH 5.7, a thermophilic zygomycete involved in plant biomass degradation harbouring putative GH9 endoglucanases
title_short Genome sequence of Rhizomucor pusillus FCH 5.7, a thermophilic zygomycete involved in plant biomass degradation harbouring putative GH9 endoglucanases
title_sort genome sequence of rhizomucor pusillus fch 5.7, a thermophilic zygomycete involved in plant biomass degradation harbouring putative gh9 endoglucanases
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6132078/
https://www.ncbi.nlm.nih.gov/pubmed/30211016
http://dx.doi.org/10.1016/j.btre.2018.e00279
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