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Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation

The increasing use of species distribution modeling (SDM) has raised new concerns regarding the inaccuracies, misunderstanding, and misuses of this important tool. One of those possible pitfalls − collinearity among environmental predictors − is assumed as an important source of model uncertainty, a...

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Detalles Bibliográficos
Autores principales: De Marco, Paulo, Nóbrega, Caroline Corrêa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6133275/
https://www.ncbi.nlm.nih.gov/pubmed/30204749
http://dx.doi.org/10.1371/journal.pone.0202403
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author De Marco, Paulo
Nóbrega, Caroline Corrêa
author_facet De Marco, Paulo
Nóbrega, Caroline Corrêa
author_sort De Marco, Paulo
collection PubMed
description The increasing use of species distribution modeling (SDM) has raised new concerns regarding the inaccuracies, misunderstanding, and misuses of this important tool. One of those possible pitfalls − collinearity among environmental predictors − is assumed as an important source of model uncertainty, although it has not been subjected to a detailed evaluation in recent SDM studies. It is expected that collinearity will increase uncertainty in model parameters and decrease statistical power. Here we use a virtual species approach to compare models built using subsets of PCA-derived variables with models based on the original highly correlated climate variables. Moreover, we evaluated whether modelling algorithms and species data characteristics generate models with varying sensitivity to collinearity. As expected, collinearity among predictors decreases the efficiency and increases the uncertainty of species distribution models. Nevertheless, the intensity of the effect varied according to the algorithm properties: more complex procedures behaved better than simple envelope models. This may support the claim that complex models such as Maxent take advantage of existing collinearity in finding the best set of parameters. The interaction of the different factors with species characteristics (centroid and tolerance in environmental space) highlighted the importance of the so-called “idiosyncrasy in species responses” to model efficiency, but differences in prevalence may represent a better explanation. However, even models with low accuracy to predict suitability of individual cells may provide meaningful information on the estimation of range-size, a key species-trait for macroecological studies. We concluded that the use of PCA-derived variables is advised both to control the negative effects of collinearity and as a more objective solution for the problem of variable selection in studies dealing with large number of species with heterogeneous responses to environmental variables.
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spelling pubmed-61332752018-09-27 Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation De Marco, Paulo Nóbrega, Caroline Corrêa PLoS One Research Article The increasing use of species distribution modeling (SDM) has raised new concerns regarding the inaccuracies, misunderstanding, and misuses of this important tool. One of those possible pitfalls − collinearity among environmental predictors − is assumed as an important source of model uncertainty, although it has not been subjected to a detailed evaluation in recent SDM studies. It is expected that collinearity will increase uncertainty in model parameters and decrease statistical power. Here we use a virtual species approach to compare models built using subsets of PCA-derived variables with models based on the original highly correlated climate variables. Moreover, we evaluated whether modelling algorithms and species data characteristics generate models with varying sensitivity to collinearity. As expected, collinearity among predictors decreases the efficiency and increases the uncertainty of species distribution models. Nevertheless, the intensity of the effect varied according to the algorithm properties: more complex procedures behaved better than simple envelope models. This may support the claim that complex models such as Maxent take advantage of existing collinearity in finding the best set of parameters. The interaction of the different factors with species characteristics (centroid and tolerance in environmental space) highlighted the importance of the so-called “idiosyncrasy in species responses” to model efficiency, but differences in prevalence may represent a better explanation. However, even models with low accuracy to predict suitability of individual cells may provide meaningful information on the estimation of range-size, a key species-trait for macroecological studies. We concluded that the use of PCA-derived variables is advised both to control the negative effects of collinearity and as a more objective solution for the problem of variable selection in studies dealing with large number of species with heterogeneous responses to environmental variables. Public Library of Science 2018-09-11 /pmc/articles/PMC6133275/ /pubmed/30204749 http://dx.doi.org/10.1371/journal.pone.0202403 Text en © 2018 De Marco, Nóbrega http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
De Marco, Paulo
Nóbrega, Caroline Corrêa
Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation
title Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation
title_full Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation
title_fullStr Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation
title_full_unstemmed Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation
title_short Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation
title_sort evaluating collinearity effects on species distribution models: an approach based on virtual species simulation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6133275/
https://www.ncbi.nlm.nih.gov/pubmed/30204749
http://dx.doi.org/10.1371/journal.pone.0202403
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