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Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation
The increasing use of species distribution modeling (SDM) has raised new concerns regarding the inaccuracies, misunderstanding, and misuses of this important tool. One of those possible pitfalls − collinearity among environmental predictors − is assumed as an important source of model uncertainty, a...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6133275/ https://www.ncbi.nlm.nih.gov/pubmed/30204749 http://dx.doi.org/10.1371/journal.pone.0202403 |
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author | De Marco, Paulo Nóbrega, Caroline Corrêa |
author_facet | De Marco, Paulo Nóbrega, Caroline Corrêa |
author_sort | De Marco, Paulo |
collection | PubMed |
description | The increasing use of species distribution modeling (SDM) has raised new concerns regarding the inaccuracies, misunderstanding, and misuses of this important tool. One of those possible pitfalls − collinearity among environmental predictors − is assumed as an important source of model uncertainty, although it has not been subjected to a detailed evaluation in recent SDM studies. It is expected that collinearity will increase uncertainty in model parameters and decrease statistical power. Here we use a virtual species approach to compare models built using subsets of PCA-derived variables with models based on the original highly correlated climate variables. Moreover, we evaluated whether modelling algorithms and species data characteristics generate models with varying sensitivity to collinearity. As expected, collinearity among predictors decreases the efficiency and increases the uncertainty of species distribution models. Nevertheless, the intensity of the effect varied according to the algorithm properties: more complex procedures behaved better than simple envelope models. This may support the claim that complex models such as Maxent take advantage of existing collinearity in finding the best set of parameters. The interaction of the different factors with species characteristics (centroid and tolerance in environmental space) highlighted the importance of the so-called “idiosyncrasy in species responses” to model efficiency, but differences in prevalence may represent a better explanation. However, even models with low accuracy to predict suitability of individual cells may provide meaningful information on the estimation of range-size, a key species-trait for macroecological studies. We concluded that the use of PCA-derived variables is advised both to control the negative effects of collinearity and as a more objective solution for the problem of variable selection in studies dealing with large number of species with heterogeneous responses to environmental variables. |
format | Online Article Text |
id | pubmed-6133275 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-61332752018-09-27 Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation De Marco, Paulo Nóbrega, Caroline Corrêa PLoS One Research Article The increasing use of species distribution modeling (SDM) has raised new concerns regarding the inaccuracies, misunderstanding, and misuses of this important tool. One of those possible pitfalls − collinearity among environmental predictors − is assumed as an important source of model uncertainty, although it has not been subjected to a detailed evaluation in recent SDM studies. It is expected that collinearity will increase uncertainty in model parameters and decrease statistical power. Here we use a virtual species approach to compare models built using subsets of PCA-derived variables with models based on the original highly correlated climate variables. Moreover, we evaluated whether modelling algorithms and species data characteristics generate models with varying sensitivity to collinearity. As expected, collinearity among predictors decreases the efficiency and increases the uncertainty of species distribution models. Nevertheless, the intensity of the effect varied according to the algorithm properties: more complex procedures behaved better than simple envelope models. This may support the claim that complex models such as Maxent take advantage of existing collinearity in finding the best set of parameters. The interaction of the different factors with species characteristics (centroid and tolerance in environmental space) highlighted the importance of the so-called “idiosyncrasy in species responses” to model efficiency, but differences in prevalence may represent a better explanation. However, even models with low accuracy to predict suitability of individual cells may provide meaningful information on the estimation of range-size, a key species-trait for macroecological studies. We concluded that the use of PCA-derived variables is advised both to control the negative effects of collinearity and as a more objective solution for the problem of variable selection in studies dealing with large number of species with heterogeneous responses to environmental variables. Public Library of Science 2018-09-11 /pmc/articles/PMC6133275/ /pubmed/30204749 http://dx.doi.org/10.1371/journal.pone.0202403 Text en © 2018 De Marco, Nóbrega http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article De Marco, Paulo Nóbrega, Caroline Corrêa Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation |
title | Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation |
title_full | Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation |
title_fullStr | Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation |
title_full_unstemmed | Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation |
title_short | Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation |
title_sort | evaluating collinearity effects on species distribution models: an approach based on virtual species simulation |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6133275/ https://www.ncbi.nlm.nih.gov/pubmed/30204749 http://dx.doi.org/10.1371/journal.pone.0202403 |
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