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Fitness effects of altering gene expression noise in Saccharomyces cerevisiae

Gene expression noise is an evolvable property of biological systems that describes differences in expression among genetically identical cells in the same environment. Prior work has shown that expression noise is heritable and can be shaped by selection, but the impact of variation in expression n...

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Autores principales: Duveau, Fabien, Hodgins-Davis, Andrea, Metzger, Brian PH, Yang, Bing, Tryban, Stephen, Walker, Elizabeth A, Lybrook, Tricia, Wittkopp, Patricia J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6133559/
https://www.ncbi.nlm.nih.gov/pubmed/30124429
http://dx.doi.org/10.7554/eLife.37272
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author Duveau, Fabien
Hodgins-Davis, Andrea
Metzger, Brian PH
Yang, Bing
Tryban, Stephen
Walker, Elizabeth A
Lybrook, Tricia
Wittkopp, Patricia J
author_facet Duveau, Fabien
Hodgins-Davis, Andrea
Metzger, Brian PH
Yang, Bing
Tryban, Stephen
Walker, Elizabeth A
Lybrook, Tricia
Wittkopp, Patricia J
author_sort Duveau, Fabien
collection PubMed
description Gene expression noise is an evolvable property of biological systems that describes differences in expression among genetically identical cells in the same environment. Prior work has shown that expression noise is heritable and can be shaped by selection, but the impact of variation in expression noise on organismal fitness has proven difficult to measure. Here, we quantify the fitness effects of altering expression noise for the TDH3 gene in Saccharomyces cerevisiae. We show that increases in expression noise can be deleterious or beneficial depending on the difference between the average expression level of a genotype and the expression level maximizing fitness. We also show that a simple model relating single-cell expression levels to population growth produces patterns consistent with our empirical data. We use this model to explore a broad range of average expression levels and expression noise, providing additional insight into the fitness effects of variation in expression noise.
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spelling pubmed-61335592018-09-13 Fitness effects of altering gene expression noise in Saccharomyces cerevisiae Duveau, Fabien Hodgins-Davis, Andrea Metzger, Brian PH Yang, Bing Tryban, Stephen Walker, Elizabeth A Lybrook, Tricia Wittkopp, Patricia J eLife Evolutionary Biology Gene expression noise is an evolvable property of biological systems that describes differences in expression among genetically identical cells in the same environment. Prior work has shown that expression noise is heritable and can be shaped by selection, but the impact of variation in expression noise on organismal fitness has proven difficult to measure. Here, we quantify the fitness effects of altering expression noise for the TDH3 gene in Saccharomyces cerevisiae. We show that increases in expression noise can be deleterious or beneficial depending on the difference between the average expression level of a genotype and the expression level maximizing fitness. We also show that a simple model relating single-cell expression levels to population growth produces patterns consistent with our empirical data. We use this model to explore a broad range of average expression levels and expression noise, providing additional insight into the fitness effects of variation in expression noise. eLife Sciences Publications, Ltd 2018-08-20 /pmc/articles/PMC6133559/ /pubmed/30124429 http://dx.doi.org/10.7554/eLife.37272 Text en © 2018, Duveau et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Evolutionary Biology
Duveau, Fabien
Hodgins-Davis, Andrea
Metzger, Brian PH
Yang, Bing
Tryban, Stephen
Walker, Elizabeth A
Lybrook, Tricia
Wittkopp, Patricia J
Fitness effects of altering gene expression noise in Saccharomyces cerevisiae
title Fitness effects of altering gene expression noise in Saccharomyces cerevisiae
title_full Fitness effects of altering gene expression noise in Saccharomyces cerevisiae
title_fullStr Fitness effects of altering gene expression noise in Saccharomyces cerevisiae
title_full_unstemmed Fitness effects of altering gene expression noise in Saccharomyces cerevisiae
title_short Fitness effects of altering gene expression noise in Saccharomyces cerevisiae
title_sort fitness effects of altering gene expression noise in saccharomyces cerevisiae
topic Evolutionary Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6133559/
https://www.ncbi.nlm.nih.gov/pubmed/30124429
http://dx.doi.org/10.7554/eLife.37272
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