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Salt Bridge in Aqueous Solution: Strong Structural Motifs but Weak Enthalpic Effect
Salt bridges are elementary motifs of protein secondary and tertiary structure and are commonly associated with structural driving force that increases stability. Often found on the interface to the solvent, they are highly susceptible to solvent–solute interactions, primarily with water but also wi...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6133928/ https://www.ncbi.nlm.nih.gov/pubmed/30206276 http://dx.doi.org/10.1038/s41598-018-31935-z |
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author | Pylaeva, Svetlana Brehm, Martin Sebastiani, Daniel |
author_facet | Pylaeva, Svetlana Brehm, Martin Sebastiani, Daniel |
author_sort | Pylaeva, Svetlana |
collection | PubMed |
description | Salt bridges are elementary motifs of protein secondary and tertiary structure and are commonly associated with structural driving force that increases stability. Often found on the interface to the solvent, they are highly susceptible to solvent–solute interactions, primarily with water but also with other cosolvents (especially ions). We have investigated the interplay of an Arginine–Aspartic acid salt bridge with simple salt ions in aqueous solution by means of molecular dynamics simulations. Besides structural and dynamical features at equilibrium, we have computed the mean force along the dissociation pathway of the salt bridge. We demonstrate that solvated ions influence the behavior of the salt bridge in a very specific and local way, namely the formation of tight ionic pairs Li(+)/Na(+)–Asp(−). Moreover, our findings show that the enthalpic relevance of the salt bridge is minor, regardless of the presence of solvated ions. |
format | Online Article Text |
id | pubmed-6133928 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-61339282018-09-15 Salt Bridge in Aqueous Solution: Strong Structural Motifs but Weak Enthalpic Effect Pylaeva, Svetlana Brehm, Martin Sebastiani, Daniel Sci Rep Article Salt bridges are elementary motifs of protein secondary and tertiary structure and are commonly associated with structural driving force that increases stability. Often found on the interface to the solvent, they are highly susceptible to solvent–solute interactions, primarily with water but also with other cosolvents (especially ions). We have investigated the interplay of an Arginine–Aspartic acid salt bridge with simple salt ions in aqueous solution by means of molecular dynamics simulations. Besides structural and dynamical features at equilibrium, we have computed the mean force along the dissociation pathway of the salt bridge. We demonstrate that solvated ions influence the behavior of the salt bridge in a very specific and local way, namely the formation of tight ionic pairs Li(+)/Na(+)–Asp(−). Moreover, our findings show that the enthalpic relevance of the salt bridge is minor, regardless of the presence of solvated ions. Nature Publishing Group UK 2018-09-11 /pmc/articles/PMC6133928/ /pubmed/30206276 http://dx.doi.org/10.1038/s41598-018-31935-z Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Pylaeva, Svetlana Brehm, Martin Sebastiani, Daniel Salt Bridge in Aqueous Solution: Strong Structural Motifs but Weak Enthalpic Effect |
title | Salt Bridge in Aqueous Solution: Strong Structural Motifs but Weak Enthalpic Effect |
title_full | Salt Bridge in Aqueous Solution: Strong Structural Motifs but Weak Enthalpic Effect |
title_fullStr | Salt Bridge in Aqueous Solution: Strong Structural Motifs but Weak Enthalpic Effect |
title_full_unstemmed | Salt Bridge in Aqueous Solution: Strong Structural Motifs but Weak Enthalpic Effect |
title_short | Salt Bridge in Aqueous Solution: Strong Structural Motifs but Weak Enthalpic Effect |
title_sort | salt bridge in aqueous solution: strong structural motifs but weak enthalpic effect |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6133928/ https://www.ncbi.nlm.nih.gov/pubmed/30206276 http://dx.doi.org/10.1038/s41598-018-31935-z |
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