Cargando…

Poly(ADP-ribose) polymerase 1 searches DNA via a ‘monkey bar’ mechanism

Poly(ADP-ribose) polymerase 1 (PARP1) is both a first responder to DNA damage and a chromatin architectural protein. How PARP1 rapidly finds DNA damage sites in the context of a nucleus filled with undamaged DNA, to which it also binds, is an unresolved question. Here, we show that PARP1 association...

Descripción completa

Detalles Bibliográficos
Autores principales: Rudolph, Johannes, Mahadevan, Jyothi, Dyer, Pamela, Luger, Karolin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6135609/
https://www.ncbi.nlm.nih.gov/pubmed/30088474
http://dx.doi.org/10.7554/eLife.37818
_version_ 1783354854959218688
author Rudolph, Johannes
Mahadevan, Jyothi
Dyer, Pamela
Luger, Karolin
author_facet Rudolph, Johannes
Mahadevan, Jyothi
Dyer, Pamela
Luger, Karolin
author_sort Rudolph, Johannes
collection PubMed
description Poly(ADP-ribose) polymerase 1 (PARP1) is both a first responder to DNA damage and a chromatin architectural protein. How PARP1 rapidly finds DNA damage sites in the context of a nucleus filled with undamaged DNA, to which it also binds, is an unresolved question. Here, we show that PARP1 association with DNA is diffusion-limited, and release of PARP1 from DNA is promoted by binding of an additional DNA molecule that facilitates a ‘monkey bar’ mechanism, also known as intersegment transfer. The WGR-domain of PARP1 is essential to this mechanism, and a point mutation (W589A) recapitulates the altered kinetics of the domain deletion. Demonstrating the physiological importance of the monkey bar mechanism for PARP1 function, the W589A mutant accumulates at sites of DNA damage more slowly following laser micro-irradiation than wild-type PARP1. Clinically relevant inhibitors of PARP1 did not alter the rate or mechanism of the release of PARP1 from DNA.
format Online
Article
Text
id pubmed-6135609
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher eLife Sciences Publications, Ltd
record_format MEDLINE/PubMed
spelling pubmed-61356092018-09-13 Poly(ADP-ribose) polymerase 1 searches DNA via a ‘monkey bar’ mechanism Rudolph, Johannes Mahadevan, Jyothi Dyer, Pamela Luger, Karolin eLife Biochemistry and Chemical Biology Poly(ADP-ribose) polymerase 1 (PARP1) is both a first responder to DNA damage and a chromatin architectural protein. How PARP1 rapidly finds DNA damage sites in the context of a nucleus filled with undamaged DNA, to which it also binds, is an unresolved question. Here, we show that PARP1 association with DNA is diffusion-limited, and release of PARP1 from DNA is promoted by binding of an additional DNA molecule that facilitates a ‘monkey bar’ mechanism, also known as intersegment transfer. The WGR-domain of PARP1 is essential to this mechanism, and a point mutation (W589A) recapitulates the altered kinetics of the domain deletion. Demonstrating the physiological importance of the monkey bar mechanism for PARP1 function, the W589A mutant accumulates at sites of DNA damage more slowly following laser micro-irradiation than wild-type PARP1. Clinically relevant inhibitors of PARP1 did not alter the rate or mechanism of the release of PARP1 from DNA. eLife Sciences Publications, Ltd 2018-08-08 /pmc/articles/PMC6135609/ /pubmed/30088474 http://dx.doi.org/10.7554/eLife.37818 Text en © 2018, Rudolph et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Biochemistry and Chemical Biology
Rudolph, Johannes
Mahadevan, Jyothi
Dyer, Pamela
Luger, Karolin
Poly(ADP-ribose) polymerase 1 searches DNA via a ‘monkey bar’ mechanism
title Poly(ADP-ribose) polymerase 1 searches DNA via a ‘monkey bar’ mechanism
title_full Poly(ADP-ribose) polymerase 1 searches DNA via a ‘monkey bar’ mechanism
title_fullStr Poly(ADP-ribose) polymerase 1 searches DNA via a ‘monkey bar’ mechanism
title_full_unstemmed Poly(ADP-ribose) polymerase 1 searches DNA via a ‘monkey bar’ mechanism
title_short Poly(ADP-ribose) polymerase 1 searches DNA via a ‘monkey bar’ mechanism
title_sort poly(adp-ribose) polymerase 1 searches dna via a ‘monkey bar’ mechanism
topic Biochemistry and Chemical Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6135609/
https://www.ncbi.nlm.nih.gov/pubmed/30088474
http://dx.doi.org/10.7554/eLife.37818
work_keys_str_mv AT rudolphjohannes polyadpribosepolymerase1searchesdnaviaamonkeybarmechanism
AT mahadevanjyothi polyadpribosepolymerase1searchesdnaviaamonkeybarmechanism
AT dyerpamela polyadpribosepolymerase1searchesdnaviaamonkeybarmechanism
AT lugerkarolin polyadpribosepolymerase1searchesdnaviaamonkeybarmechanism