Cargando…

Machine Learning Creates a Simple Endoscopic Classification System that Improves Dysplasia Detection in Barrett's Oesophagus amongst Non-expert Endoscopists

INTRODUCTION: Barrett's oesophagus (BE) is a precursor to oesophageal adenocarcinoma (OAC). Endoscopic surveillance is performed to detect dysplasia arising in BE as it is likely to be amenable to curative treatment. At present, there are no guidelines on who should perform surveillance endosco...

Descripción completa

Detalles Bibliográficos
Autores principales: Sehgal, Vinay, Rosenfeld, Avi, Graham, David G., Lipman, Gideon, Bisschops, Raf, Ragunath, Krish, Rodriguez-Justo, Manuel, Novelli, Marco, Banks, Matthew R., Haidry, Rehan J., Lovat, Laurence B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6136585/
https://www.ncbi.nlm.nih.gov/pubmed/30245711
http://dx.doi.org/10.1155/2018/1872437
_version_ 1783355029928804352
author Sehgal, Vinay
Rosenfeld, Avi
Graham, David G.
Lipman, Gideon
Bisschops, Raf
Ragunath, Krish
Rodriguez-Justo, Manuel
Novelli, Marco
Banks, Matthew R.
Haidry, Rehan J.
Lovat, Laurence B.
author_facet Sehgal, Vinay
Rosenfeld, Avi
Graham, David G.
Lipman, Gideon
Bisschops, Raf
Ragunath, Krish
Rodriguez-Justo, Manuel
Novelli, Marco
Banks, Matthew R.
Haidry, Rehan J.
Lovat, Laurence B.
author_sort Sehgal, Vinay
collection PubMed
description INTRODUCTION: Barrett's oesophagus (BE) is a precursor to oesophageal adenocarcinoma (OAC). Endoscopic surveillance is performed to detect dysplasia arising in BE as it is likely to be amenable to curative treatment. At present, there are no guidelines on who should perform surveillance endoscopy in BE. Machine learning (ML) is a branch of artificial intelligence (AI) that generates simple rules, known as decision trees (DTs). We hypothesised that a DT generated from recognised expert endoscopists could be used to improve dysplasia detection in non-expert endoscopists. To our knowledge, ML has never been applied in this manner. METHODS: Video recordings were collected from patients with non-dysplastic (ND-BE) and dysplastic Barrett's oesophagus (D-BE) undergoing high-definition endoscopy with i-Scan enhancement (PENTAX®). A strict protocol was used to record areas of interest after which a corresponding biopsy was taken to confirm the histological diagnosis. In a blinded manner, videos were shown to 3 experts who were asked to interpret them based on their mucosal and microvasculature patterns and presence of nodularity and ulceration as well as overall suspected diagnosis. Data generated were entered into the WEKA package to construct a DT for dysplasia prediction. Non-expert endoscopists (gastroenterology specialist registrars in training with variable experience and undergraduate medical students with no experience) were asked to score these same videos both before and after web-based training using the DT constructed from the expert opinion. Accuracy, sensitivity, and specificity values were calculated before and after training where p < 0.05 was statistically significant. RESULTS: Videos from 40 patients were collected including 12 both before and after acetic acid (ACA) application. Experts' average accuracy for dysplasia prediction was 88%. When experts' answers were entered into a DT, the resultant decision model had a 92% accuracy with a mean sensitivity and specificity of 97% and 88%, respectively. Addition of ACA did not improve dysplasia detection. Untrained medical students tended to have a high sensitivity but poor specificity as they “overcalled” normal areas. Gastroenterology trainees did the opposite with overall low sensitivity but high specificity. Detection improved significantly and accuracy rose in both groups after formal web-based training although it did it reach the accuracy generated by experts. For trainees, sensitivity rose significantly from 71% to 83% with minimal loss of specificity. Specificity rose sharply in students from 31% to 49% with no loss of sensitivity. CONCLUSION: ML is able to define rules learnt from expert opinion. These generate a simple algorithm to accurately predict dysplasia. Once taught to non-experts, the algorithm significantly improves their rate of dysplasia detection. This opens the door to standardised training and assessment of competence for those who perform endoscopy in BE. It may shorten the learning curve and might also be used to compare competence of trainees with recognised experts as part of their accreditation process.
format Online
Article
Text
id pubmed-6136585
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-61365852018-09-23 Machine Learning Creates a Simple Endoscopic Classification System that Improves Dysplasia Detection in Barrett's Oesophagus amongst Non-expert Endoscopists Sehgal, Vinay Rosenfeld, Avi Graham, David G. Lipman, Gideon Bisschops, Raf Ragunath, Krish Rodriguez-Justo, Manuel Novelli, Marco Banks, Matthew R. Haidry, Rehan J. Lovat, Laurence B. Gastroenterol Res Pract Research Article INTRODUCTION: Barrett's oesophagus (BE) is a precursor to oesophageal adenocarcinoma (OAC). Endoscopic surveillance is performed to detect dysplasia arising in BE as it is likely to be amenable to curative treatment. At present, there are no guidelines on who should perform surveillance endoscopy in BE. Machine learning (ML) is a branch of artificial intelligence (AI) that generates simple rules, known as decision trees (DTs). We hypothesised that a DT generated from recognised expert endoscopists could be used to improve dysplasia detection in non-expert endoscopists. To our knowledge, ML has never been applied in this manner. METHODS: Video recordings were collected from patients with non-dysplastic (ND-BE) and dysplastic Barrett's oesophagus (D-BE) undergoing high-definition endoscopy with i-Scan enhancement (PENTAX®). A strict protocol was used to record areas of interest after which a corresponding biopsy was taken to confirm the histological diagnosis. In a blinded manner, videos were shown to 3 experts who were asked to interpret them based on their mucosal and microvasculature patterns and presence of nodularity and ulceration as well as overall suspected diagnosis. Data generated were entered into the WEKA package to construct a DT for dysplasia prediction. Non-expert endoscopists (gastroenterology specialist registrars in training with variable experience and undergraduate medical students with no experience) were asked to score these same videos both before and after web-based training using the DT constructed from the expert opinion. Accuracy, sensitivity, and specificity values were calculated before and after training where p < 0.05 was statistically significant. RESULTS: Videos from 40 patients were collected including 12 both before and after acetic acid (ACA) application. Experts' average accuracy for dysplasia prediction was 88%. When experts' answers were entered into a DT, the resultant decision model had a 92% accuracy with a mean sensitivity and specificity of 97% and 88%, respectively. Addition of ACA did not improve dysplasia detection. Untrained medical students tended to have a high sensitivity but poor specificity as they “overcalled” normal areas. Gastroenterology trainees did the opposite with overall low sensitivity but high specificity. Detection improved significantly and accuracy rose in both groups after formal web-based training although it did it reach the accuracy generated by experts. For trainees, sensitivity rose significantly from 71% to 83% with minimal loss of specificity. Specificity rose sharply in students from 31% to 49% with no loss of sensitivity. CONCLUSION: ML is able to define rules learnt from expert opinion. These generate a simple algorithm to accurately predict dysplasia. Once taught to non-experts, the algorithm significantly improves their rate of dysplasia detection. This opens the door to standardised training and assessment of competence for those who perform endoscopy in BE. It may shorten the learning curve and might also be used to compare competence of trainees with recognised experts as part of their accreditation process. Hindawi 2018-08-29 /pmc/articles/PMC6136585/ /pubmed/30245711 http://dx.doi.org/10.1155/2018/1872437 Text en Copyright © 2018 Vinay Sehgal et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Sehgal, Vinay
Rosenfeld, Avi
Graham, David G.
Lipman, Gideon
Bisschops, Raf
Ragunath, Krish
Rodriguez-Justo, Manuel
Novelli, Marco
Banks, Matthew R.
Haidry, Rehan J.
Lovat, Laurence B.
Machine Learning Creates a Simple Endoscopic Classification System that Improves Dysplasia Detection in Barrett's Oesophagus amongst Non-expert Endoscopists
title Machine Learning Creates a Simple Endoscopic Classification System that Improves Dysplasia Detection in Barrett's Oesophagus amongst Non-expert Endoscopists
title_full Machine Learning Creates a Simple Endoscopic Classification System that Improves Dysplasia Detection in Barrett's Oesophagus amongst Non-expert Endoscopists
title_fullStr Machine Learning Creates a Simple Endoscopic Classification System that Improves Dysplasia Detection in Barrett's Oesophagus amongst Non-expert Endoscopists
title_full_unstemmed Machine Learning Creates a Simple Endoscopic Classification System that Improves Dysplasia Detection in Barrett's Oesophagus amongst Non-expert Endoscopists
title_short Machine Learning Creates a Simple Endoscopic Classification System that Improves Dysplasia Detection in Barrett's Oesophagus amongst Non-expert Endoscopists
title_sort machine learning creates a simple endoscopic classification system that improves dysplasia detection in barrett's oesophagus amongst non-expert endoscopists
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6136585/
https://www.ncbi.nlm.nih.gov/pubmed/30245711
http://dx.doi.org/10.1155/2018/1872437
work_keys_str_mv AT sehgalvinay machinelearningcreatesasimpleendoscopicclassificationsystemthatimprovesdysplasiadetectioninbarrettsoesophagusamongstnonexpertendoscopists
AT rosenfeldavi machinelearningcreatesasimpleendoscopicclassificationsystemthatimprovesdysplasiadetectioninbarrettsoesophagusamongstnonexpertendoscopists
AT grahamdavidg machinelearningcreatesasimpleendoscopicclassificationsystemthatimprovesdysplasiadetectioninbarrettsoesophagusamongstnonexpertendoscopists
AT lipmangideon machinelearningcreatesasimpleendoscopicclassificationsystemthatimprovesdysplasiadetectioninbarrettsoesophagusamongstnonexpertendoscopists
AT bisschopsraf machinelearningcreatesasimpleendoscopicclassificationsystemthatimprovesdysplasiadetectioninbarrettsoesophagusamongstnonexpertendoscopists
AT ragunathkrish machinelearningcreatesasimpleendoscopicclassificationsystemthatimprovesdysplasiadetectioninbarrettsoesophagusamongstnonexpertendoscopists
AT rodriguezjustomanuel machinelearningcreatesasimpleendoscopicclassificationsystemthatimprovesdysplasiadetectioninbarrettsoesophagusamongstnonexpertendoscopists
AT novellimarco machinelearningcreatesasimpleendoscopicclassificationsystemthatimprovesdysplasiadetectioninbarrettsoesophagusamongstnonexpertendoscopists
AT banksmatthewr machinelearningcreatesasimpleendoscopicclassificationsystemthatimprovesdysplasiadetectioninbarrettsoesophagusamongstnonexpertendoscopists
AT haidryrehanj machinelearningcreatesasimpleendoscopicclassificationsystemthatimprovesdysplasiadetectioninbarrettsoesophagusamongstnonexpertendoscopists
AT lovatlaurenceb machinelearningcreatesasimpleendoscopicclassificationsystemthatimprovesdysplasiadetectioninbarrettsoesophagusamongstnonexpertendoscopists