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Tracking Fish Abundance by Underwater Image Recognition

Marine cabled video-observatories allow the non-destructive sampling of species at frequencies and durations that have never been attained before. Nevertheless, the lack of appropriate methods to automatically process video imagery limits this technology for the purposes of ecosystem monitoring. Aut...

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Autores principales: Marini, Simone, Fanelli, Emanuela, Sbragaglia, Valerio, Azzurro, Ernesto, Del Rio Fernandez, Joaquin, Aguzzi, Jacopo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137190/
https://www.ncbi.nlm.nih.gov/pubmed/30213999
http://dx.doi.org/10.1038/s41598-018-32089-8
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author Marini, Simone
Fanelli, Emanuela
Sbragaglia, Valerio
Azzurro, Ernesto
Del Rio Fernandez, Joaquin
Aguzzi, Jacopo
author_facet Marini, Simone
Fanelli, Emanuela
Sbragaglia, Valerio
Azzurro, Ernesto
Del Rio Fernandez, Joaquin
Aguzzi, Jacopo
author_sort Marini, Simone
collection PubMed
description Marine cabled video-observatories allow the non-destructive sampling of species at frequencies and durations that have never been attained before. Nevertheless, the lack of appropriate methods to automatically process video imagery limits this technology for the purposes of ecosystem monitoring. Automation is a prerequisite to deal with the huge quantities of video footage captured by cameras, which can then transform these devices into true autonomous sensors. In this study, we have developed a novel methodology that is based on genetic programming for content-based image analysis. Our aim was to capture the temporal dynamics of fish abundance. We processed more than 20,000 images that were acquired in a challenging real-world coastal scenario at the OBSEA-EMSO testing-site. The images were collected at 30-min. frequency, continuously for two years, over day and night. The highly variable environmental conditions allowed us to test the effectiveness of our approach under changing light radiation, water turbidity, background confusion, and bio-fouling growth on the camera housing. The automated recognition results were highly correlated with the manual counts and they were highly reliable when used to track fish variations at different hourly, daily, and monthly time scales. In addition, our methodology could be easily transferred to other cabled video-observatories.
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spelling pubmed-61371902018-09-15 Tracking Fish Abundance by Underwater Image Recognition Marini, Simone Fanelli, Emanuela Sbragaglia, Valerio Azzurro, Ernesto Del Rio Fernandez, Joaquin Aguzzi, Jacopo Sci Rep Article Marine cabled video-observatories allow the non-destructive sampling of species at frequencies and durations that have never been attained before. Nevertheless, the lack of appropriate methods to automatically process video imagery limits this technology for the purposes of ecosystem monitoring. Automation is a prerequisite to deal with the huge quantities of video footage captured by cameras, which can then transform these devices into true autonomous sensors. In this study, we have developed a novel methodology that is based on genetic programming for content-based image analysis. Our aim was to capture the temporal dynamics of fish abundance. We processed more than 20,000 images that were acquired in a challenging real-world coastal scenario at the OBSEA-EMSO testing-site. The images were collected at 30-min. frequency, continuously for two years, over day and night. The highly variable environmental conditions allowed us to test the effectiveness of our approach under changing light radiation, water turbidity, background confusion, and bio-fouling growth on the camera housing. The automated recognition results were highly correlated with the manual counts and they were highly reliable when used to track fish variations at different hourly, daily, and monthly time scales. In addition, our methodology could be easily transferred to other cabled video-observatories. Nature Publishing Group UK 2018-09-13 /pmc/articles/PMC6137190/ /pubmed/30213999 http://dx.doi.org/10.1038/s41598-018-32089-8 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Marini, Simone
Fanelli, Emanuela
Sbragaglia, Valerio
Azzurro, Ernesto
Del Rio Fernandez, Joaquin
Aguzzi, Jacopo
Tracking Fish Abundance by Underwater Image Recognition
title Tracking Fish Abundance by Underwater Image Recognition
title_full Tracking Fish Abundance by Underwater Image Recognition
title_fullStr Tracking Fish Abundance by Underwater Image Recognition
title_full_unstemmed Tracking Fish Abundance by Underwater Image Recognition
title_short Tracking Fish Abundance by Underwater Image Recognition
title_sort tracking fish abundance by underwater image recognition
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137190/
https://www.ncbi.nlm.nih.gov/pubmed/30213999
http://dx.doi.org/10.1038/s41598-018-32089-8
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