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Investigating the Composition and Metabolic Potential of Microbial Communities in Chocolate Pots Hot Springs
Iron (Fe) redox-based metabolisms likely supported life on early Earth and may support life on other Fe-rich rocky planets such as Mars. Modern systems that support active Fe redox cycling such as Chocolate Pots (CP) hot springs provide insight into how life could have functioned in such environment...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137239/ https://www.ncbi.nlm.nih.gov/pubmed/30245673 http://dx.doi.org/10.3389/fmicb.2018.02075 |
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author | Fortney, Nathaniel W. He, Shaomei Converse, Brandon J. Boyd, Eric S. Roden, Eric E. |
author_facet | Fortney, Nathaniel W. He, Shaomei Converse, Brandon J. Boyd, Eric S. Roden, Eric E. |
author_sort | Fortney, Nathaniel W. |
collection | PubMed |
description | Iron (Fe) redox-based metabolisms likely supported life on early Earth and may support life on other Fe-rich rocky planets such as Mars. Modern systems that support active Fe redox cycling such as Chocolate Pots (CP) hot springs provide insight into how life could have functioned in such environments. Previous research demonstrated that Fe- and Si-rich and slightly acidic to circumneutral-pH springs at CP host active dissimilatory Fe(III) reducing microorganisms. However, the abundance and distribution of Fe(III)-reducing communities at CP is not well-understood, especially as they exist in situ. In addition, the potential for direct Fe(II) oxidation by lithotrophs in CP springs is understudied, in particular when compared to indirect oxidation promoted by oxygen producing Cyanobacteria. Here, a culture-independent approach, including 16S rRNA gene amplicon and shotgun metagenomic sequencing, was used to determine the distribution of putative Fe cycling microorganisms in vent fluids and sediment cores collected along the outflow channel of CP. Metagenome-assembled genomes (MAGs) of organisms native to sediment and planktonic microbial communities were screened for extracellular electron transfer (EET) systems putatively involved in Fe redox cycling and for CO(2) fixation pathways. Abundant MAGs containing putative EET systems were identified as part of the sediment community at locations where Fe(III) reduction activity has previously been documented. MAGs encoding both putative EET systems and CO(2) fixation pathways, inferred to be FeOB, were also present, but were less abundant components of the communities. These results suggest that the majority of the Fe(III) oxides that support in situ Fe(III) reduction are derived from abiotic oxidation. This study provides new insights into the interplay between Fe redox cycling and CO(2) fixation in sustaining chemotrophic communities in CP with attendant implications for other neutral-pH hot springs. |
format | Online Article Text |
id | pubmed-6137239 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-61372392018-09-21 Investigating the Composition and Metabolic Potential of Microbial Communities in Chocolate Pots Hot Springs Fortney, Nathaniel W. He, Shaomei Converse, Brandon J. Boyd, Eric S. Roden, Eric E. Front Microbiol Microbiology Iron (Fe) redox-based metabolisms likely supported life on early Earth and may support life on other Fe-rich rocky planets such as Mars. Modern systems that support active Fe redox cycling such as Chocolate Pots (CP) hot springs provide insight into how life could have functioned in such environments. Previous research demonstrated that Fe- and Si-rich and slightly acidic to circumneutral-pH springs at CP host active dissimilatory Fe(III) reducing microorganisms. However, the abundance and distribution of Fe(III)-reducing communities at CP is not well-understood, especially as they exist in situ. In addition, the potential for direct Fe(II) oxidation by lithotrophs in CP springs is understudied, in particular when compared to indirect oxidation promoted by oxygen producing Cyanobacteria. Here, a culture-independent approach, including 16S rRNA gene amplicon and shotgun metagenomic sequencing, was used to determine the distribution of putative Fe cycling microorganisms in vent fluids and sediment cores collected along the outflow channel of CP. Metagenome-assembled genomes (MAGs) of organisms native to sediment and planktonic microbial communities were screened for extracellular electron transfer (EET) systems putatively involved in Fe redox cycling and for CO(2) fixation pathways. Abundant MAGs containing putative EET systems were identified as part of the sediment community at locations where Fe(III) reduction activity has previously been documented. MAGs encoding both putative EET systems and CO(2) fixation pathways, inferred to be FeOB, were also present, but were less abundant components of the communities. These results suggest that the majority of the Fe(III) oxides that support in situ Fe(III) reduction are derived from abiotic oxidation. This study provides new insights into the interplay between Fe redox cycling and CO(2) fixation in sustaining chemotrophic communities in CP with attendant implications for other neutral-pH hot springs. Frontiers Media S.A. 2018-09-07 /pmc/articles/PMC6137239/ /pubmed/30245673 http://dx.doi.org/10.3389/fmicb.2018.02075 Text en Copyright © 2018 Fortney, He, Converse, Boyd and Roden. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Fortney, Nathaniel W. He, Shaomei Converse, Brandon J. Boyd, Eric S. Roden, Eric E. Investigating the Composition and Metabolic Potential of Microbial Communities in Chocolate Pots Hot Springs |
title | Investigating the Composition and Metabolic Potential of Microbial Communities in Chocolate Pots Hot Springs |
title_full | Investigating the Composition and Metabolic Potential of Microbial Communities in Chocolate Pots Hot Springs |
title_fullStr | Investigating the Composition and Metabolic Potential of Microbial Communities in Chocolate Pots Hot Springs |
title_full_unstemmed | Investigating the Composition and Metabolic Potential of Microbial Communities in Chocolate Pots Hot Springs |
title_short | Investigating the Composition and Metabolic Potential of Microbial Communities in Chocolate Pots Hot Springs |
title_sort | investigating the composition and metabolic potential of microbial communities in chocolate pots hot springs |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137239/ https://www.ncbi.nlm.nih.gov/pubmed/30245673 http://dx.doi.org/10.3389/fmicb.2018.02075 |
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