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Norwegian e-Infrastructure for Life Sciences (NeLS)

The Norwegian e-Infrastructure for Life Sciences (NeLS) has been developed by ELIXIR Norway to provide its users with a system enabling data storage, sharing, and analysis in a project-oriented fashion. The system is available through easy-to-use web interfaces, including the Galaxy workbench for da...

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Autores principales: Tekle, Kidane M., Gundersen, Sveinung, Klepper, Kjetil, Bongo, Lars Ailo, Raknes, Inge Alexander, Li, Xiaxi, Zhang, Wei, Andreetta, Christian, Mulugeta, Teshome Dagne, Kalaš, Matúš, Rye, Morten B., Hjerde, Erik, Antony Samy, Jeevan Karloss, Fornous, Ghislain, Azab, Abdulrahman, Våge, Dag Inge, Hovig, Eivind, Willassen, Nils Peder, Drabløs, Finn, Nygård, Ståle, Petersen, Kjell, Jonassen, Inge
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137412/
https://www.ncbi.nlm.nih.gov/pubmed/30271575
http://dx.doi.org/10.12688/f1000research.15119.1
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author Tekle, Kidane M.
Gundersen, Sveinung
Klepper, Kjetil
Bongo, Lars Ailo
Raknes, Inge Alexander
Li, Xiaxi
Zhang, Wei
Andreetta, Christian
Mulugeta, Teshome Dagne
Kalaš, Matúš
Rye, Morten B.
Hjerde, Erik
Antony Samy, Jeevan Karloss
Fornous, Ghislain
Azab, Abdulrahman
Våge, Dag Inge
Hovig, Eivind
Willassen, Nils Peder
Drabløs, Finn
Nygård, Ståle
Petersen, Kjell
Jonassen, Inge
author_facet Tekle, Kidane M.
Gundersen, Sveinung
Klepper, Kjetil
Bongo, Lars Ailo
Raknes, Inge Alexander
Li, Xiaxi
Zhang, Wei
Andreetta, Christian
Mulugeta, Teshome Dagne
Kalaš, Matúš
Rye, Morten B.
Hjerde, Erik
Antony Samy, Jeevan Karloss
Fornous, Ghislain
Azab, Abdulrahman
Våge, Dag Inge
Hovig, Eivind
Willassen, Nils Peder
Drabløs, Finn
Nygård, Ståle
Petersen, Kjell
Jonassen, Inge
author_sort Tekle, Kidane M.
collection PubMed
description The Norwegian e-Infrastructure for Life Sciences (NeLS) has been developed by ELIXIR Norway to provide its users with a system enabling data storage, sharing, and analysis in a project-oriented fashion. The system is available through easy-to-use web interfaces, including the Galaxy workbench for data analysis and workflow execution. Users confident with a command-line interface and programming may also access it through Secure Shell (SSH) and application programming interfaces (APIs).  NeLS has been in production since 2015, with training and support provided by the help desk of ELIXIR Norway. Through collaboration with NorSeq, the national consortium for high-throughput sequencing, an integrated service is offered so that sequencing data generated in a research project is provided to the involved researchers through NeLS. Sensitive data, such as individual genomic sequencing data, are handled using the TSD (Services for Sensitive Data) platform provided by Sigma2 and the University of Oslo. NeLS integrates national e-infrastructure storage and computing resources, and is also integrated with the SEEK platform in order to store large data files produced by experiments described in SEEK.   In this article, we outline the architecture of NeLS and discuss possible directions for further development.
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spelling pubmed-61374122018-09-28 Norwegian e-Infrastructure for Life Sciences (NeLS) Tekle, Kidane M. Gundersen, Sveinung Klepper, Kjetil Bongo, Lars Ailo Raknes, Inge Alexander Li, Xiaxi Zhang, Wei Andreetta, Christian Mulugeta, Teshome Dagne Kalaš, Matúš Rye, Morten B. Hjerde, Erik Antony Samy, Jeevan Karloss Fornous, Ghislain Azab, Abdulrahman Våge, Dag Inge Hovig, Eivind Willassen, Nils Peder Drabløs, Finn Nygård, Ståle Petersen, Kjell Jonassen, Inge F1000Res Software Tool Article The Norwegian e-Infrastructure for Life Sciences (NeLS) has been developed by ELIXIR Norway to provide its users with a system enabling data storage, sharing, and analysis in a project-oriented fashion. The system is available through easy-to-use web interfaces, including the Galaxy workbench for data analysis and workflow execution. Users confident with a command-line interface and programming may also access it through Secure Shell (SSH) and application programming interfaces (APIs).  NeLS has been in production since 2015, with training and support provided by the help desk of ELIXIR Norway. Through collaboration with NorSeq, the national consortium for high-throughput sequencing, an integrated service is offered so that sequencing data generated in a research project is provided to the involved researchers through NeLS. Sensitive data, such as individual genomic sequencing data, are handled using the TSD (Services for Sensitive Data) platform provided by Sigma2 and the University of Oslo. NeLS integrates national e-infrastructure storage and computing resources, and is also integrated with the SEEK platform in order to store large data files produced by experiments described in SEEK.   In this article, we outline the architecture of NeLS and discuss possible directions for further development. F1000 Research Limited 2018-06-29 /pmc/articles/PMC6137412/ /pubmed/30271575 http://dx.doi.org/10.12688/f1000research.15119.1 Text en Copyright: © 2018 Tekle KM et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software Tool Article
Tekle, Kidane M.
Gundersen, Sveinung
Klepper, Kjetil
Bongo, Lars Ailo
Raknes, Inge Alexander
Li, Xiaxi
Zhang, Wei
Andreetta, Christian
Mulugeta, Teshome Dagne
Kalaš, Matúš
Rye, Morten B.
Hjerde, Erik
Antony Samy, Jeevan Karloss
Fornous, Ghislain
Azab, Abdulrahman
Våge, Dag Inge
Hovig, Eivind
Willassen, Nils Peder
Drabløs, Finn
Nygård, Ståle
Petersen, Kjell
Jonassen, Inge
Norwegian e-Infrastructure for Life Sciences (NeLS)
title Norwegian e-Infrastructure for Life Sciences (NeLS)
title_full Norwegian e-Infrastructure for Life Sciences (NeLS)
title_fullStr Norwegian e-Infrastructure for Life Sciences (NeLS)
title_full_unstemmed Norwegian e-Infrastructure for Life Sciences (NeLS)
title_short Norwegian e-Infrastructure for Life Sciences (NeLS)
title_sort norwegian e-infrastructure for life sciences (nels)
topic Software Tool Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137412/
https://www.ncbi.nlm.nih.gov/pubmed/30271575
http://dx.doi.org/10.12688/f1000research.15119.1
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