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A Bayesian Network Model for Predicting Post-stroke Outcomes With Available Risk Factors
Bayesian network is an increasingly popular method in modeling uncertain and complex problems, because its interpretability is often more useful than plain prediction. To satisfy the core requirement in medical research to obtain interpretable prediction with high accuracy, we constructed an inferen...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137617/ https://www.ncbi.nlm.nih.gov/pubmed/30245663 http://dx.doi.org/10.3389/fneur.2018.00699 |
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author | Park, Eunjeong Chang, Hyuk-jae Nam, Hyo Suk |
author_facet | Park, Eunjeong Chang, Hyuk-jae Nam, Hyo Suk |
author_sort | Park, Eunjeong |
collection | PubMed |
description | Bayesian network is an increasingly popular method in modeling uncertain and complex problems, because its interpretability is often more useful than plain prediction. To satisfy the core requirement in medical research to obtain interpretable prediction with high accuracy, we constructed an inference engine for post-stroke outcomes based on Bayesian network classifiers. The prediction system that was trained on data of 3,605 patients with acute stroke forecasts the functional independence at 3 months and the mortality 1 year after stroke. Feature selection methods were applied to eliminate less relevant and redundant features from 76 risk variables. The Bayesian network classifiers were trained with a hill-climbing searching for the qualified network structure and parameters measured by maximum description length. We evaluated and optimized the proposed system to increase the area under the receiver operating characteristic curve (AUC) while ensuring acceptable sensitivity for the class-imbalanced data. The performance evaluation demonstrated that the Bayesian network with selected features by wrapper-type feature selection can predict 3-month functional independence with an AUC of 0.889 using only 19 risk variables and 1-year mortality with an AUC of 0.893 using 24 variables. The Bayesian network with 50 features filtered by information gain can predict 3-month functional independence with an AUC of 0.875 and 1-year mortality with an AUC of 0.895. We also built an online prediction service, Yonsei Stroke Outcome Inference System, to substantialize the proposed solution for patients with stroke. |
format | Online Article Text |
id | pubmed-6137617 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-61376172018-09-21 A Bayesian Network Model for Predicting Post-stroke Outcomes With Available Risk Factors Park, Eunjeong Chang, Hyuk-jae Nam, Hyo Suk Front Neurol Neurology Bayesian network is an increasingly popular method in modeling uncertain and complex problems, because its interpretability is often more useful than plain prediction. To satisfy the core requirement in medical research to obtain interpretable prediction with high accuracy, we constructed an inference engine for post-stroke outcomes based on Bayesian network classifiers. The prediction system that was trained on data of 3,605 patients with acute stroke forecasts the functional independence at 3 months and the mortality 1 year after stroke. Feature selection methods were applied to eliminate less relevant and redundant features from 76 risk variables. The Bayesian network classifiers were trained with a hill-climbing searching for the qualified network structure and parameters measured by maximum description length. We evaluated and optimized the proposed system to increase the area under the receiver operating characteristic curve (AUC) while ensuring acceptable sensitivity for the class-imbalanced data. The performance evaluation demonstrated that the Bayesian network with selected features by wrapper-type feature selection can predict 3-month functional independence with an AUC of 0.889 using only 19 risk variables and 1-year mortality with an AUC of 0.893 using 24 variables. The Bayesian network with 50 features filtered by information gain can predict 3-month functional independence with an AUC of 0.875 and 1-year mortality with an AUC of 0.895. We also built an online prediction service, Yonsei Stroke Outcome Inference System, to substantialize the proposed solution for patients with stroke. Frontiers Media S.A. 2018-09-07 /pmc/articles/PMC6137617/ /pubmed/30245663 http://dx.doi.org/10.3389/fneur.2018.00699 Text en Copyright © 2018 Park, Chang and Nam. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neurology Park, Eunjeong Chang, Hyuk-jae Nam, Hyo Suk A Bayesian Network Model for Predicting Post-stroke Outcomes With Available Risk Factors |
title | A Bayesian Network Model for Predicting Post-stroke Outcomes With Available Risk Factors |
title_full | A Bayesian Network Model for Predicting Post-stroke Outcomes With Available Risk Factors |
title_fullStr | A Bayesian Network Model for Predicting Post-stroke Outcomes With Available Risk Factors |
title_full_unstemmed | A Bayesian Network Model for Predicting Post-stroke Outcomes With Available Risk Factors |
title_short | A Bayesian Network Model for Predicting Post-stroke Outcomes With Available Risk Factors |
title_sort | bayesian network model for predicting post-stroke outcomes with available risk factors |
topic | Neurology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137617/ https://www.ncbi.nlm.nih.gov/pubmed/30245663 http://dx.doi.org/10.3389/fneur.2018.00699 |
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