A comprehensive annotation for the root-knot nematode Meloidogyne incognita proteome data

Root-knot nematodes are devastating pathogens of crop plants. The draft genome of southern root-knot nematode Meloidogyne incognita was published in 2008 and additional genome and transcriptome data became available later on. However, lack of a publically available annotation for M. incognita genome...

Descripción completa

Detalles Bibliográficos
Autores principales: Somvanshi, Vishal Singh, Ghosh, Olivia, Budhwar, Roli, Dubay, Bhoomika, Shukla, Rohit Nandan, Rao, Uma
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Genetics, Genomics and Molecular Biology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6140804/
https://www.ncbi.nlm.nih.gov/pubmed/30228995
http://dx.doi.org/10.1016/j.dib.2018.05.131
_version_ 1783355627758682112
author Somvanshi, Vishal Singh
Ghosh, Olivia
Budhwar, Roli
Dubay, Bhoomika
Shukla, Rohit Nandan
Rao, Uma
author_facet Somvanshi, Vishal Singh
Ghosh, Olivia
Budhwar, Roli
Dubay, Bhoomika
Shukla, Rohit Nandan
Rao, Uma
author_sort Somvanshi, Vishal Singh
collection PubMed
description Root-knot nematodes are devastating pathogens of crop plants. The draft genome of southern root-knot nematode Meloidogyne incognita was published in 2008 and additional genome and transcriptome data became available later on. However, lack of a publically available annotation for M. incognita genome and transcriptome(s) limits the use of this data for functional and comparative genomics by the interested researchers. Here we present a comprehensive annotation for the M. incognita proteome data available at INRA Meloidogyne Genomic Resources page (https://meloidogyne.inra.fr/Downloads/Meloidogyne-incognita-V2-2017) and European Nucleotide Archive (ENA) (accession number: ERP009887) using a multi-pronged approach.
format Online
Article
Text
id pubmed-6140804
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-61408042018-09-18 A comprehensive annotation for the root-knot nematode Meloidogyne incognita proteome data Somvanshi, Vishal Singh Ghosh, Olivia Budhwar, Roli Dubay, Bhoomika Shukla, Rohit Nandan Rao, Uma Data Brief Genetics, Genomics and Molecular Biology Root-knot nematodes are devastating pathogens of crop plants. The draft genome of southern root-knot nematode Meloidogyne incognita was published in 2008 and additional genome and transcriptome data became available later on. However, lack of a publically available annotation for M. incognita genome and transcriptome(s) limits the use of this data for functional and comparative genomics by the interested researchers. Here we present a comprehensive annotation for the M. incognita proteome data available at INRA Meloidogyne Genomic Resources page (https://meloidogyne.inra.fr/Downloads/Meloidogyne-incognita-V2-2017) and European Nucleotide Archive (ENA) (accession number: ERP009887) using a multi-pronged approach. Elsevier 2018-05-26 /pmc/articles/PMC6140804/ /pubmed/30228995 http://dx.doi.org/10.1016/j.dib.2018.05.131 Text en © 2018 Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Genetics, Genomics and Molecular Biology
Somvanshi, Vishal Singh
Ghosh, Olivia
Budhwar, Roli
Dubay, Bhoomika
Shukla, Rohit Nandan
Rao, Uma
A comprehensive annotation for the root-knot nematode Meloidogyne incognita proteome data
title A comprehensive annotation for the root-knot nematode Meloidogyne incognita proteome data
title_full A comprehensive annotation for the root-knot nematode Meloidogyne incognita proteome data
title_fullStr A comprehensive annotation for the root-knot nematode Meloidogyne incognita proteome data
title_full_unstemmed A comprehensive annotation for the root-knot nematode Meloidogyne incognita proteome data
title_short A comprehensive annotation for the root-knot nematode Meloidogyne incognita proteome data
title_sort comprehensive annotation for the root-knot nematode meloidogyne incognita proteome data
topic Genetics, Genomics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6140804/
https://www.ncbi.nlm.nih.gov/pubmed/30228995
http://dx.doi.org/10.1016/j.dib.2018.05.131
work_keys_str_mv AT somvanshivishalsingh acomprehensiveannotationfortherootknotnematodemeloidogyneincognitaproteomedata
AT ghosholivia acomprehensiveannotationfortherootknotnematodemeloidogyneincognitaproteomedata
AT budhwarroli acomprehensiveannotationfortherootknotnematodemeloidogyneincognitaproteomedata
AT dubaybhoomika acomprehensiveannotationfortherootknotnematodemeloidogyneincognitaproteomedata
AT shuklarohitnandan acomprehensiveannotationfortherootknotnematodemeloidogyneincognitaproteomedata
AT raouma acomprehensiveannotationfortherootknotnematodemeloidogyneincognitaproteomedata
AT somvanshivishalsingh comprehensiveannotationfortherootknotnematodemeloidogyneincognitaproteomedata
AT ghosholivia comprehensiveannotationfortherootknotnematodemeloidogyneincognitaproteomedata
AT budhwarroli comprehensiveannotationfortherootknotnematodemeloidogyneincognitaproteomedata
AT dubaybhoomika comprehensiveannotationfortherootknotnematodemeloidogyneincognitaproteomedata
AT shuklarohitnandan comprehensiveannotationfortherootknotnematodemeloidogyneincognitaproteomedata
AT raouma comprehensiveannotationfortherootknotnematodemeloidogyneincognitaproteomedata

Ejemplares similares