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De novo transcriptome resources of the lichens, Dirinaria sp. UKM-J1 and UKM-K1 collected from Jerantut and Klang, Malaysia

Lichen is a symbiotic organism that exists as a single composite body consisting of a mycobiont (fungus) and a photobiont (algae or a cyanobacterium). Many lichen species are considered as extremophiles due to their tolerance to radiation, desiccation, temperature and pollution. However, not all lic...

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Autores principales: Bharudin, Izwan, Abdul Rahim, Siti NurhaniAbdul, Abu Bakar, Mohd FaizalAbu, Ibrahim, Siti Norsaidah, Kamaruddin, Shazilah, Latif, Mohd Talib, Samsudin, Mohd Wahid, Abdul Murad, Abdul Munir, Abu Bakar, Farah DibaAbu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6141494/
https://www.ncbi.nlm.nih.gov/pubmed/30229114
http://dx.doi.org/10.1016/j.dib.2018.07.020
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author Bharudin, Izwan
Abdul Rahim, Siti NurhaniAbdul
Abu Bakar, Mohd FaizalAbu
Ibrahim, Siti Norsaidah
Kamaruddin, Shazilah
Latif, Mohd Talib
Samsudin, Mohd Wahid
Abdul Murad, Abdul Munir
Abu Bakar, Farah DibaAbu
author_facet Bharudin, Izwan
Abdul Rahim, Siti NurhaniAbdul
Abu Bakar, Mohd FaizalAbu
Ibrahim, Siti Norsaidah
Kamaruddin, Shazilah
Latif, Mohd Talib
Samsudin, Mohd Wahid
Abdul Murad, Abdul Munir
Abu Bakar, Farah DibaAbu
author_sort Bharudin, Izwan
collection PubMed
description Lichen is a symbiotic organism that exists as a single composite body consisting of a mycobiont (fungus) and a photobiont (algae or a cyanobacterium). Many lichen species are considered as extremophiles due to their tolerance to radiation, desiccation, temperature and pollution. However, not all lichen species are tolerant to harsh environmental conditions as several species are sensitive for example to nitrogen, sulphur, acidity, heavy metals, halogens (e.g. fluoride) and ozone. Thus, to better understand why some lichens can withstand exposure to pollutants as opposed to those that are susceptible, we focused on the lichen species of Dirinaria known for their wide distribution in the tropics, subtropics and pantropical, and moderate tolerance to air pollution. Their moderate tolerance to air pollution affords them to thrive in good air quality environments as well as polluted air environments. Lichen samples of Dirinaria sp., UKM-J1 and UKM-K1, were respectively collected from two areas with different levels of air quality based on Air Pollutant Index or API (with index pollutant criteria of PM(10), carbon monoxide, ozone, nitrogen dioxide and sulfur dioxide) in the outskirt of Jerantut (UKM-J1), a rural area in the middle of Peninsular Malaysia and the township of Klang (UKM-K1), in a busy area of the Klang Valley, Malaysia. API was monitored throughout 2012–2013 whereby the sample collection site in Klang showed markedly higher concentrations of pollutants in all the index pollutant criteria as compared to that of Jerantut. We performed transcriptome sequencing using Illumina RNA-seq technology and de novo assembly of the transcripts from the lichen samples. Raw reads from both libraries were deposited in the NCBI database with the accession number SRP138994.
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spelling pubmed-61414942018-09-18 De novo transcriptome resources of the lichens, Dirinaria sp. UKM-J1 and UKM-K1 collected from Jerantut and Klang, Malaysia Bharudin, Izwan Abdul Rahim, Siti NurhaniAbdul Abu Bakar, Mohd FaizalAbu Ibrahim, Siti Norsaidah Kamaruddin, Shazilah Latif, Mohd Talib Samsudin, Mohd Wahid Abdul Murad, Abdul Munir Abu Bakar, Farah DibaAbu Data Brief Environmental Science Lichen is a symbiotic organism that exists as a single composite body consisting of a mycobiont (fungus) and a photobiont (algae or a cyanobacterium). Many lichen species are considered as extremophiles due to their tolerance to radiation, desiccation, temperature and pollution. However, not all lichen species are tolerant to harsh environmental conditions as several species are sensitive for example to nitrogen, sulphur, acidity, heavy metals, halogens (e.g. fluoride) and ozone. Thus, to better understand why some lichens can withstand exposure to pollutants as opposed to those that are susceptible, we focused on the lichen species of Dirinaria known for their wide distribution in the tropics, subtropics and pantropical, and moderate tolerance to air pollution. Their moderate tolerance to air pollution affords them to thrive in good air quality environments as well as polluted air environments. Lichen samples of Dirinaria sp., UKM-J1 and UKM-K1, were respectively collected from two areas with different levels of air quality based on Air Pollutant Index or API (with index pollutant criteria of PM(10), carbon monoxide, ozone, nitrogen dioxide and sulfur dioxide) in the outskirt of Jerantut (UKM-J1), a rural area in the middle of Peninsular Malaysia and the township of Klang (UKM-K1), in a busy area of the Klang Valley, Malaysia. API was monitored throughout 2012–2013 whereby the sample collection site in Klang showed markedly higher concentrations of pollutants in all the index pollutant criteria as compared to that of Jerantut. We performed transcriptome sequencing using Illumina RNA-seq technology and de novo assembly of the transcripts from the lichen samples. Raw reads from both libraries were deposited in the NCBI database with the accession number SRP138994. Elsevier 2018-07-10 /pmc/articles/PMC6141494/ /pubmed/30229114 http://dx.doi.org/10.1016/j.dib.2018.07.020 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Environmental Science
Bharudin, Izwan
Abdul Rahim, Siti NurhaniAbdul
Abu Bakar, Mohd FaizalAbu
Ibrahim, Siti Norsaidah
Kamaruddin, Shazilah
Latif, Mohd Talib
Samsudin, Mohd Wahid
Abdul Murad, Abdul Munir
Abu Bakar, Farah DibaAbu
De novo transcriptome resources of the lichens, Dirinaria sp. UKM-J1 and UKM-K1 collected from Jerantut and Klang, Malaysia
title De novo transcriptome resources of the lichens, Dirinaria sp. UKM-J1 and UKM-K1 collected from Jerantut and Klang, Malaysia
title_full De novo transcriptome resources of the lichens, Dirinaria sp. UKM-J1 and UKM-K1 collected from Jerantut and Klang, Malaysia
title_fullStr De novo transcriptome resources of the lichens, Dirinaria sp. UKM-J1 and UKM-K1 collected from Jerantut and Klang, Malaysia
title_full_unstemmed De novo transcriptome resources of the lichens, Dirinaria sp. UKM-J1 and UKM-K1 collected from Jerantut and Klang, Malaysia
title_short De novo transcriptome resources of the lichens, Dirinaria sp. UKM-J1 and UKM-K1 collected from Jerantut and Klang, Malaysia
title_sort de novo transcriptome resources of the lichens, dirinaria sp. ukm-j1 and ukm-k1 collected from jerantut and klang, malaysia
topic Environmental Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6141494/
https://www.ncbi.nlm.nih.gov/pubmed/30229114
http://dx.doi.org/10.1016/j.dib.2018.07.020
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