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Computational measurement of tumor immune microenvironment in gastric adenocarcinomas
The use of four groups of tumor immune microenvironments (TME) based on PD-L1 and tumor-infiltrating T lymphocytes (TIL) is a reliable biomarker for anti-PD-1/PD-L1 inhibitor therapy. We classified the TME in 241 gastric cancers which were subdivided according to 40 EBV+, 76 microsatellite instabili...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6141531/ https://www.ncbi.nlm.nih.gov/pubmed/30224753 http://dx.doi.org/10.1038/s41598-018-32299-0 |
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author | Chang, Young Hwan Heo, You Jeong Cho, Junhun Song, Sang Yong Lee, Jeeyun Kim, Kyoung-Mee |
author_facet | Chang, Young Hwan Heo, You Jeong Cho, Junhun Song, Sang Yong Lee, Jeeyun Kim, Kyoung-Mee |
author_sort | Chang, Young Hwan |
collection | PubMed |
description | The use of four groups of tumor immune microenvironments (TME) based on PD-L1 and tumor-infiltrating T lymphocytes (TIL) is a reliable biomarker for anti-PD-1/PD-L1 inhibitor therapy. We classified the TME in 241 gastric cancers which were subdivided according to 40 EBV+, 76 microsatellite instability-high (MSI-H), and 125 EBV-/microsatellite-stable (MSS) subtypes by quantitative image analysis (QIA) and correlated the results with mRNA expression levels. The mean PD-L1 ratio and CD8 ratio in EBV+, MSI-H, and EBV−/MSS GCs were significantly different (P < 0.006). The PD-L1 ratio and CD8 ratio obtained by QIA correlated well with the RNA levels of PD-L1 (r = 0.63) and CD8 (r = 0.67), respectively. The TME were type I (PD-L1(H)/CD8(H)) in 45, type II (PD-L1(L)/CD8(L)) in 106, type III (PD-L1(H)/CD8(L)) in 8, and type IV (PD-L1(L)/CD8(H)) in 82 cases. The type I TME was significantly associated with high TIL (P = 3.0E-11) and EBV+ status (P = 8.55E-08). In conclusion, QIA results correlated well with the mRNA expression levels and classified TME of gastric cancers. |
format | Online Article Text |
id | pubmed-6141531 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-61415312018-09-20 Computational measurement of tumor immune microenvironment in gastric adenocarcinomas Chang, Young Hwan Heo, You Jeong Cho, Junhun Song, Sang Yong Lee, Jeeyun Kim, Kyoung-Mee Sci Rep Article The use of four groups of tumor immune microenvironments (TME) based on PD-L1 and tumor-infiltrating T lymphocytes (TIL) is a reliable biomarker for anti-PD-1/PD-L1 inhibitor therapy. We classified the TME in 241 gastric cancers which were subdivided according to 40 EBV+, 76 microsatellite instability-high (MSI-H), and 125 EBV-/microsatellite-stable (MSS) subtypes by quantitative image analysis (QIA) and correlated the results with mRNA expression levels. The mean PD-L1 ratio and CD8 ratio in EBV+, MSI-H, and EBV−/MSS GCs were significantly different (P < 0.006). The PD-L1 ratio and CD8 ratio obtained by QIA correlated well with the RNA levels of PD-L1 (r = 0.63) and CD8 (r = 0.67), respectively. The TME were type I (PD-L1(H)/CD8(H)) in 45, type II (PD-L1(L)/CD8(L)) in 106, type III (PD-L1(H)/CD8(L)) in 8, and type IV (PD-L1(L)/CD8(H)) in 82 cases. The type I TME was significantly associated with high TIL (P = 3.0E-11) and EBV+ status (P = 8.55E-08). In conclusion, QIA results correlated well with the mRNA expression levels and classified TME of gastric cancers. Nature Publishing Group UK 2018-09-17 /pmc/articles/PMC6141531/ /pubmed/30224753 http://dx.doi.org/10.1038/s41598-018-32299-0 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Chang, Young Hwan Heo, You Jeong Cho, Junhun Song, Sang Yong Lee, Jeeyun Kim, Kyoung-Mee Computational measurement of tumor immune microenvironment in gastric adenocarcinomas |
title | Computational measurement of tumor immune microenvironment in gastric adenocarcinomas |
title_full | Computational measurement of tumor immune microenvironment in gastric adenocarcinomas |
title_fullStr | Computational measurement of tumor immune microenvironment in gastric adenocarcinomas |
title_full_unstemmed | Computational measurement of tumor immune microenvironment in gastric adenocarcinomas |
title_short | Computational measurement of tumor immune microenvironment in gastric adenocarcinomas |
title_sort | computational measurement of tumor immune microenvironment in gastric adenocarcinomas |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6141531/ https://www.ncbi.nlm.nih.gov/pubmed/30224753 http://dx.doi.org/10.1038/s41598-018-32299-0 |
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