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Automatic Segmentation of Corpus Callosum in Midsagittal Based on Bayesian Inference Consisting of Sparse Representation Error and Multi-Atlas Voting

In this paper, we introduce a novel automatic method for Corpus Callosum (CC) in midsagittal plane segmentation. The robust segmentation of CC in midsagittal plane is key role for quantitative study of structural features of CC associated with various neurological disorder such as epilepsy, autism,...

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Autores principales: Park, Gilsoon, Kwak, Kichang, Seo, Sang Won, Lee, Jong-Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6142891/
https://www.ncbi.nlm.nih.gov/pubmed/30271320
http://dx.doi.org/10.3389/fnins.2018.00629
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author Park, Gilsoon
Kwak, Kichang
Seo, Sang Won
Lee, Jong-Min
author_facet Park, Gilsoon
Kwak, Kichang
Seo, Sang Won
Lee, Jong-Min
author_sort Park, Gilsoon
collection PubMed
description In this paper, we introduce a novel automatic method for Corpus Callosum (CC) in midsagittal plane segmentation. The robust segmentation of CC in midsagittal plane is key role for quantitative study of structural features of CC associated with various neurological disorder such as epilepsy, autism, Alzheimer's disease, and so on. Our approach is based on Bayesian inference using sparse representation and multi-atlas voting which both methods are used in various medical imaging, and show outstanding performance. Prior information in the proposed Bayesian inference is obtained from probability map generated from multi-atlas voting. The probability map contains the information of shape and location of CC of target image. Likelihood in the proposed Bayesian inference is obtained from gamma distribution function, generated from reconstruction errors (or sparse representation error), which are calculated in sparse representation of target patch using foreground dictionary and background dictionary each. Unlike the usual sparse representation method, we added gradient magnitude and gradient direction information to the patches of dictionaries and target, which had better segmentation performance than when not added. We compared three main segmentation results as follow: (1) the joint label fusion (JLF) method which is state-of-art method in multi-atlas voting based segmentation for evaluation of our method; (2) prior information estimated from multi-atlas voting only; (3) likelihood estimated from comparison of the reconstruction errors from sparse representation error only; (4) the proposed Bayesian inference. The methods were evaluated using two data sets of T1-weighted images, which one data set consists of 100 normal young subjects and the other data set consist of 25 normal old subjects and 22 old subjects with heavy drinker. In both data sets, the proposed Bayesian inference method has significantly the best segmentation performance than using each method separately.
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spelling pubmed-61428912018-09-28 Automatic Segmentation of Corpus Callosum in Midsagittal Based on Bayesian Inference Consisting of Sparse Representation Error and Multi-Atlas Voting Park, Gilsoon Kwak, Kichang Seo, Sang Won Lee, Jong-Min Front Neurosci Neuroscience In this paper, we introduce a novel automatic method for Corpus Callosum (CC) in midsagittal plane segmentation. The robust segmentation of CC in midsagittal plane is key role for quantitative study of structural features of CC associated with various neurological disorder such as epilepsy, autism, Alzheimer's disease, and so on. Our approach is based on Bayesian inference using sparse representation and multi-atlas voting which both methods are used in various medical imaging, and show outstanding performance. Prior information in the proposed Bayesian inference is obtained from probability map generated from multi-atlas voting. The probability map contains the information of shape and location of CC of target image. Likelihood in the proposed Bayesian inference is obtained from gamma distribution function, generated from reconstruction errors (or sparse representation error), which are calculated in sparse representation of target patch using foreground dictionary and background dictionary each. Unlike the usual sparse representation method, we added gradient magnitude and gradient direction information to the patches of dictionaries and target, which had better segmentation performance than when not added. We compared three main segmentation results as follow: (1) the joint label fusion (JLF) method which is state-of-art method in multi-atlas voting based segmentation for evaluation of our method; (2) prior information estimated from multi-atlas voting only; (3) likelihood estimated from comparison of the reconstruction errors from sparse representation error only; (4) the proposed Bayesian inference. The methods were evaluated using two data sets of T1-weighted images, which one data set consists of 100 normal young subjects and the other data set consist of 25 normal old subjects and 22 old subjects with heavy drinker. In both data sets, the proposed Bayesian inference method has significantly the best segmentation performance than using each method separately. Frontiers Media S.A. 2018-09-11 /pmc/articles/PMC6142891/ /pubmed/30271320 http://dx.doi.org/10.3389/fnins.2018.00629 Text en Copyright © 2018 Park, Kwak, Seo and Lee. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Park, Gilsoon
Kwak, Kichang
Seo, Sang Won
Lee, Jong-Min
Automatic Segmentation of Corpus Callosum in Midsagittal Based on Bayesian Inference Consisting of Sparse Representation Error and Multi-Atlas Voting
title Automatic Segmentation of Corpus Callosum in Midsagittal Based on Bayesian Inference Consisting of Sparse Representation Error and Multi-Atlas Voting
title_full Automatic Segmentation of Corpus Callosum in Midsagittal Based on Bayesian Inference Consisting of Sparse Representation Error and Multi-Atlas Voting
title_fullStr Automatic Segmentation of Corpus Callosum in Midsagittal Based on Bayesian Inference Consisting of Sparse Representation Error and Multi-Atlas Voting
title_full_unstemmed Automatic Segmentation of Corpus Callosum in Midsagittal Based on Bayesian Inference Consisting of Sparse Representation Error and Multi-Atlas Voting
title_short Automatic Segmentation of Corpus Callosum in Midsagittal Based on Bayesian Inference Consisting of Sparse Representation Error and Multi-Atlas Voting
title_sort automatic segmentation of corpus callosum in midsagittal based on bayesian inference consisting of sparse representation error and multi-atlas voting
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6142891/
https://www.ncbi.nlm.nih.gov/pubmed/30271320
http://dx.doi.org/10.3389/fnins.2018.00629
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