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Large-scale investigation of the reasons why potentially important genes are ignored

Biomedical research has been previously reported to primarily focus on a minority of all known genes. Here, we demonstrate that these differences in attention can be explained, to a large extent, exclusively from a small set of identifiable chemical, physical, and biological properties of genes. Tog...

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Detalles Bibliográficos
Autores principales: Stoeger, Thomas, Gerlach, Martin, Morimoto, Richard I., Nunes Amaral, Luís A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143198/
https://www.ncbi.nlm.nih.gov/pubmed/30226837
http://dx.doi.org/10.1371/journal.pbio.2006643
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author Stoeger, Thomas
Gerlach, Martin
Morimoto, Richard I.
Nunes Amaral, Luís A.
author_facet Stoeger, Thomas
Gerlach, Martin
Morimoto, Richard I.
Nunes Amaral, Luís A.
author_sort Stoeger, Thomas
collection PubMed
description Biomedical research has been previously reported to primarily focus on a minority of all known genes. Here, we demonstrate that these differences in attention can be explained, to a large extent, exclusively from a small set of identifiable chemical, physical, and biological properties of genes. Together with knowledge about homologous genes from model organisms, these features allow us to accurately predict the number of publications on individual human genes, the year of their first report, the levels of funding awarded by the National Institutes of Health (NIH), and the development of drugs against disease-associated genes. By explicitly identifying the reasons for gene-specific bias and performing a meta-analysis of existing computational and experimental knowledge bases, we describe gene-specific strategies for the identification of important but hitherto ignored genes that can open novel directions for future investigation.
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spelling pubmed-61431982018-09-27 Large-scale investigation of the reasons why potentially important genes are ignored Stoeger, Thomas Gerlach, Martin Morimoto, Richard I. Nunes Amaral, Luís A. PLoS Biol Meta-Research Article Biomedical research has been previously reported to primarily focus on a minority of all known genes. Here, we demonstrate that these differences in attention can be explained, to a large extent, exclusively from a small set of identifiable chemical, physical, and biological properties of genes. Together with knowledge about homologous genes from model organisms, these features allow us to accurately predict the number of publications on individual human genes, the year of their first report, the levels of funding awarded by the National Institutes of Health (NIH), and the development of drugs against disease-associated genes. By explicitly identifying the reasons for gene-specific bias and performing a meta-analysis of existing computational and experimental knowledge bases, we describe gene-specific strategies for the identification of important but hitherto ignored genes that can open novel directions for future investigation. Public Library of Science 2018-09-18 /pmc/articles/PMC6143198/ /pubmed/30226837 http://dx.doi.org/10.1371/journal.pbio.2006643 Text en © 2018 Stoeger et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Meta-Research Article
Stoeger, Thomas
Gerlach, Martin
Morimoto, Richard I.
Nunes Amaral, Luís A.
Large-scale investigation of the reasons why potentially important genes are ignored
title Large-scale investigation of the reasons why potentially important genes are ignored
title_full Large-scale investigation of the reasons why potentially important genes are ignored
title_fullStr Large-scale investigation of the reasons why potentially important genes are ignored
title_full_unstemmed Large-scale investigation of the reasons why potentially important genes are ignored
title_short Large-scale investigation of the reasons why potentially important genes are ignored
title_sort large-scale investigation of the reasons why potentially important genes are ignored
topic Meta-Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143198/
https://www.ncbi.nlm.nih.gov/pubmed/30226837
http://dx.doi.org/10.1371/journal.pbio.2006643
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