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Large-scale investigation of the reasons why potentially important genes are ignored
Biomedical research has been previously reported to primarily focus on a minority of all known genes. Here, we demonstrate that these differences in attention can be explained, to a large extent, exclusively from a small set of identifiable chemical, physical, and biological properties of genes. Tog...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143198/ https://www.ncbi.nlm.nih.gov/pubmed/30226837 http://dx.doi.org/10.1371/journal.pbio.2006643 |
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author | Stoeger, Thomas Gerlach, Martin Morimoto, Richard I. Nunes Amaral, Luís A. |
author_facet | Stoeger, Thomas Gerlach, Martin Morimoto, Richard I. Nunes Amaral, Luís A. |
author_sort | Stoeger, Thomas |
collection | PubMed |
description | Biomedical research has been previously reported to primarily focus on a minority of all known genes. Here, we demonstrate that these differences in attention can be explained, to a large extent, exclusively from a small set of identifiable chemical, physical, and biological properties of genes. Together with knowledge about homologous genes from model organisms, these features allow us to accurately predict the number of publications on individual human genes, the year of their first report, the levels of funding awarded by the National Institutes of Health (NIH), and the development of drugs against disease-associated genes. By explicitly identifying the reasons for gene-specific bias and performing a meta-analysis of existing computational and experimental knowledge bases, we describe gene-specific strategies for the identification of important but hitherto ignored genes that can open novel directions for future investigation. |
format | Online Article Text |
id | pubmed-6143198 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-61431982018-09-27 Large-scale investigation of the reasons why potentially important genes are ignored Stoeger, Thomas Gerlach, Martin Morimoto, Richard I. Nunes Amaral, Luís A. PLoS Biol Meta-Research Article Biomedical research has been previously reported to primarily focus on a minority of all known genes. Here, we demonstrate that these differences in attention can be explained, to a large extent, exclusively from a small set of identifiable chemical, physical, and biological properties of genes. Together with knowledge about homologous genes from model organisms, these features allow us to accurately predict the number of publications on individual human genes, the year of their first report, the levels of funding awarded by the National Institutes of Health (NIH), and the development of drugs against disease-associated genes. By explicitly identifying the reasons for gene-specific bias and performing a meta-analysis of existing computational and experimental knowledge bases, we describe gene-specific strategies for the identification of important but hitherto ignored genes that can open novel directions for future investigation. Public Library of Science 2018-09-18 /pmc/articles/PMC6143198/ /pubmed/30226837 http://dx.doi.org/10.1371/journal.pbio.2006643 Text en © 2018 Stoeger et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Meta-Research Article Stoeger, Thomas Gerlach, Martin Morimoto, Richard I. Nunes Amaral, Luís A. Large-scale investigation of the reasons why potentially important genes are ignored |
title | Large-scale investigation of the reasons why potentially important genes are ignored |
title_full | Large-scale investigation of the reasons why potentially important genes are ignored |
title_fullStr | Large-scale investigation of the reasons why potentially important genes are ignored |
title_full_unstemmed | Large-scale investigation of the reasons why potentially important genes are ignored |
title_short | Large-scale investigation of the reasons why potentially important genes are ignored |
title_sort | large-scale investigation of the reasons why potentially important genes are ignored |
topic | Meta-Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143198/ https://www.ncbi.nlm.nih.gov/pubmed/30226837 http://dx.doi.org/10.1371/journal.pbio.2006643 |
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