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Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal

Adaptive evolution in humans has rarely been characterized for its whole set of components, i.e. selective pressure, adaptive phenotype, beneficial alleles and realized fitness differential. We combined approaches for detecting polygenic adaptations and for mapping the genetic bases of physiological...

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Autores principales: Jeong, Choongwon, Witonsky, David B., Basnyat, Buddha, Neupane, Maniraj, Beall, Cynthia M., Childs, Geoff, Craig, Sienna R., Novembre, John, Di Rienzo, Anna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143271/
https://www.ncbi.nlm.nih.gov/pubmed/30188897
http://dx.doi.org/10.1371/journal.pgen.1007650
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author Jeong, Choongwon
Witonsky, David B.
Basnyat, Buddha
Neupane, Maniraj
Beall, Cynthia M.
Childs, Geoff
Craig, Sienna R.
Novembre, John
Di Rienzo, Anna
author_facet Jeong, Choongwon
Witonsky, David B.
Basnyat, Buddha
Neupane, Maniraj
Beall, Cynthia M.
Childs, Geoff
Craig, Sienna R.
Novembre, John
Di Rienzo, Anna
author_sort Jeong, Choongwon
collection PubMed
description Adaptive evolution in humans has rarely been characterized for its whole set of components, i.e. selective pressure, adaptive phenotype, beneficial alleles and realized fitness differential. We combined approaches for detecting polygenic adaptations and for mapping the genetic bases of physiological and fertility phenotypes in approximately 1000 indigenous ethnically Tibetan women from Nepal, adapted to high altitude. The results of genome-wide association analyses and tests for polygenic adaptations showed evidence of positive selection for alleles associated with more pregnancies and live births and evidence of negative selection for those associated with higher offspring mortality. Lower hemoglobin level did not show clear evidence for polygenic adaptation, despite its strong association with an EPAS1 haplotype carrying selective sweep signals.
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spelling pubmed-61432712018-10-19 Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal Jeong, Choongwon Witonsky, David B. Basnyat, Buddha Neupane, Maniraj Beall, Cynthia M. Childs, Geoff Craig, Sienna R. Novembre, John Di Rienzo, Anna PLoS Genet Research Article Adaptive evolution in humans has rarely been characterized for its whole set of components, i.e. selective pressure, adaptive phenotype, beneficial alleles and realized fitness differential. We combined approaches for detecting polygenic adaptations and for mapping the genetic bases of physiological and fertility phenotypes in approximately 1000 indigenous ethnically Tibetan women from Nepal, adapted to high altitude. The results of genome-wide association analyses and tests for polygenic adaptations showed evidence of positive selection for alleles associated with more pregnancies and live births and evidence of negative selection for those associated with higher offspring mortality. Lower hemoglobin level did not show clear evidence for polygenic adaptation, despite its strong association with an EPAS1 haplotype carrying selective sweep signals. Public Library of Science 2018-09-06 /pmc/articles/PMC6143271/ /pubmed/30188897 http://dx.doi.org/10.1371/journal.pgen.1007650 Text en © 2018 Jeong et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Jeong, Choongwon
Witonsky, David B.
Basnyat, Buddha
Neupane, Maniraj
Beall, Cynthia M.
Childs, Geoff
Craig, Sienna R.
Novembre, John
Di Rienzo, Anna
Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal
title Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal
title_full Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal
title_fullStr Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal
title_full_unstemmed Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal
title_short Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal
title_sort detecting past and ongoing natural selection among ethnically tibetan women at high altitude in nepal
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143271/
https://www.ncbi.nlm.nih.gov/pubmed/30188897
http://dx.doi.org/10.1371/journal.pgen.1007650
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