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Landscape of somatic mutations in gastric cancer assessed using next-generation sequencing analysis

Gastric cancer is a highly heterogeneous disease and the second leading cause of cancer-associated mortality. However, the genomic basis of gastric cancer is not completely understood and the underlying genetic heterogeneity has not been well studied. In the present study, 1,021 genes were sequenced...

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Autores principales: Pan, Xuan, Ji, Xiaozhi, Zhang, Renmin, Zhou, Zhaofei, Zhong, Yuejiao, Peng, Wei, Sun, Ning, Xu, Xinyu, Xia, Lei, Li, Pansong, Lu, Jianwei, Tu, Jing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6144630/
https://www.ncbi.nlm.nih.gov/pubmed/30250552
http://dx.doi.org/10.3892/ol.2018.9314
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author Pan, Xuan
Ji, Xiaozhi
Zhang, Renmin
Zhou, Zhaofei
Zhong, Yuejiao
Peng, Wei
Sun, Ning
Xu, Xinyu
Xia, Lei
Li, Pansong
Lu, Jianwei
Tu, Jing
author_facet Pan, Xuan
Ji, Xiaozhi
Zhang, Renmin
Zhou, Zhaofei
Zhong, Yuejiao
Peng, Wei
Sun, Ning
Xu, Xinyu
Xia, Lei
Li, Pansong
Lu, Jianwei
Tu, Jing
author_sort Pan, Xuan
collection PubMed
description Gastric cancer is a highly heterogeneous disease and the second leading cause of cancer-associated mortality. However, the genomic basis of gastric cancer is not completely understood and the underlying genetic heterogeneity has not been well studied. In the present study, 1,021 genes were sequenced and the somatic mutations of 45 formalin-fixed, paraffin-embedded gastric adenocarcinoma samples were assessed using next-generation sequencing technologies. In the present study, a median sequencing coverage depth of 708-fold was achieved. Somatic genomic alterations were detected in 37/45 patients (82.4%) and the most frequent genetic alterations identified were tumor protein P53 (TP53) gene mutations. Mutations in MLL4, ERBB3, FBXW7, MLL3, MTOR, NOTCH1, PIK3CA, KRAS, ERBB4 and EGFR were also detected. Patients with TP53 mutations had a higher number of somatic mutations, and the total number of somatic mutations was weakly correlated with patient age. These results provided data on the intratumoral heterogeneity of gastric cancer and may be used in order to develop personalized cancer therapy.
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spelling pubmed-61446302018-09-24 Landscape of somatic mutations in gastric cancer assessed using next-generation sequencing analysis Pan, Xuan Ji, Xiaozhi Zhang, Renmin Zhou, Zhaofei Zhong, Yuejiao Peng, Wei Sun, Ning Xu, Xinyu Xia, Lei Li, Pansong Lu, Jianwei Tu, Jing Oncol Lett Articles Gastric cancer is a highly heterogeneous disease and the second leading cause of cancer-associated mortality. However, the genomic basis of gastric cancer is not completely understood and the underlying genetic heterogeneity has not been well studied. In the present study, 1,021 genes were sequenced and the somatic mutations of 45 formalin-fixed, paraffin-embedded gastric adenocarcinoma samples were assessed using next-generation sequencing technologies. In the present study, a median sequencing coverage depth of 708-fold was achieved. Somatic genomic alterations were detected in 37/45 patients (82.4%) and the most frequent genetic alterations identified were tumor protein P53 (TP53) gene mutations. Mutations in MLL4, ERBB3, FBXW7, MLL3, MTOR, NOTCH1, PIK3CA, KRAS, ERBB4 and EGFR were also detected. Patients with TP53 mutations had a higher number of somatic mutations, and the total number of somatic mutations was weakly correlated with patient age. These results provided data on the intratumoral heterogeneity of gastric cancer and may be used in order to develop personalized cancer therapy. D.A. Spandidos 2018-10 2018-08-16 /pmc/articles/PMC6144630/ /pubmed/30250552 http://dx.doi.org/10.3892/ol.2018.9314 Text en Copyright: © Pan et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Pan, Xuan
Ji, Xiaozhi
Zhang, Renmin
Zhou, Zhaofei
Zhong, Yuejiao
Peng, Wei
Sun, Ning
Xu, Xinyu
Xia, Lei
Li, Pansong
Lu, Jianwei
Tu, Jing
Landscape of somatic mutations in gastric cancer assessed using next-generation sequencing analysis
title Landscape of somatic mutations in gastric cancer assessed using next-generation sequencing analysis
title_full Landscape of somatic mutations in gastric cancer assessed using next-generation sequencing analysis
title_fullStr Landscape of somatic mutations in gastric cancer assessed using next-generation sequencing analysis
title_full_unstemmed Landscape of somatic mutations in gastric cancer assessed using next-generation sequencing analysis
title_short Landscape of somatic mutations in gastric cancer assessed using next-generation sequencing analysis
title_sort landscape of somatic mutations in gastric cancer assessed using next-generation sequencing analysis
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6144630/
https://www.ncbi.nlm.nih.gov/pubmed/30250552
http://dx.doi.org/10.3892/ol.2018.9314
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