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Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA
Next-generation sequencing of single-stranded DNA (ssDNA) is attracting increased attention from a wide variety of research fields. Accordingly, various methods are actively being tested for the efficient adaptor-tagging of ssDNA. We conceived a novel chemo-enzymatic method termed terminal deoxynucl...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6144795/ https://www.ncbi.nlm.nih.gov/pubmed/29846671 http://dx.doi.org/10.1093/nar/gky452 |
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author | Miura, Fumihito Fujino, Tomoko Kogashi, Kanako Shibata, Yukiko Miura, Miki Isobe, Hiroyuki Ito, Takashi |
author_facet | Miura, Fumihito Fujino, Tomoko Kogashi, Kanako Shibata, Yukiko Miura, Miki Isobe, Hiroyuki Ito, Takashi |
author_sort | Miura, Fumihito |
collection | PubMed |
description | Next-generation sequencing of single-stranded DNA (ssDNA) is attracting increased attention from a wide variety of research fields. Accordingly, various methods are actively being tested for the efficient adaptor-tagging of ssDNA. We conceived a novel chemo-enzymatic method termed terminal deoxynucleotidyl transferase (TdT)-assisted, copper-catalyzed azide-alkyne cycloaddition (CuAAC)-mediated ssDNA ligation (TCS ligation). In this method, TdT is used to incorporate a single 3′-azide-modified dideoxyribonucleotide onto the 3′-end of target ssDNA, followed by CuAAC-mediated click ligation of the azide-incorporated 3′-end to a 5′-ethynylated synthetic adaptor. This report presents the first proof-of-principle application of TCS ligation with its use in the preparation of a next-generation sequencing library. |
format | Online Article Text |
id | pubmed-6144795 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-61447952018-09-25 Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA Miura, Fumihito Fujino, Tomoko Kogashi, Kanako Shibata, Yukiko Miura, Miki Isobe, Hiroyuki Ito, Takashi Nucleic Acids Res Methods Online Next-generation sequencing of single-stranded DNA (ssDNA) is attracting increased attention from a wide variety of research fields. Accordingly, various methods are actively being tested for the efficient adaptor-tagging of ssDNA. We conceived a novel chemo-enzymatic method termed terminal deoxynucleotidyl transferase (TdT)-assisted, copper-catalyzed azide-alkyne cycloaddition (CuAAC)-mediated ssDNA ligation (TCS ligation). In this method, TdT is used to incorporate a single 3′-azide-modified dideoxyribonucleotide onto the 3′-end of target ssDNA, followed by CuAAC-mediated click ligation of the azide-incorporated 3′-end to a 5′-ethynylated synthetic adaptor. This report presents the first proof-of-principle application of TCS ligation with its use in the preparation of a next-generation sequencing library. Oxford University Press 2018-09-19 2018-05-26 /pmc/articles/PMC6144795/ /pubmed/29846671 http://dx.doi.org/10.1093/nar/gky452 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Methods Online Miura, Fumihito Fujino, Tomoko Kogashi, Kanako Shibata, Yukiko Miura, Miki Isobe, Hiroyuki Ito, Takashi Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA |
title | Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA |
title_full | Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA |
title_fullStr | Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA |
title_full_unstemmed | Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA |
title_short | Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA |
title_sort | triazole linking for preparation of a next-generation sequencing library from single-stranded dna |
topic | Methods Online |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6144795/ https://www.ncbi.nlm.nih.gov/pubmed/29846671 http://dx.doi.org/10.1093/nar/gky452 |
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