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Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA

Next-generation sequencing of single-stranded DNA (ssDNA) is attracting increased attention from a wide variety of research fields. Accordingly, various methods are actively being tested for the efficient adaptor-tagging of ssDNA. We conceived a novel chemo-enzymatic method termed terminal deoxynucl...

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Autores principales: Miura, Fumihito, Fujino, Tomoko, Kogashi, Kanako, Shibata, Yukiko, Miura, Miki, Isobe, Hiroyuki, Ito, Takashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6144795/
https://www.ncbi.nlm.nih.gov/pubmed/29846671
http://dx.doi.org/10.1093/nar/gky452
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author Miura, Fumihito
Fujino, Tomoko
Kogashi, Kanako
Shibata, Yukiko
Miura, Miki
Isobe, Hiroyuki
Ito, Takashi
author_facet Miura, Fumihito
Fujino, Tomoko
Kogashi, Kanako
Shibata, Yukiko
Miura, Miki
Isobe, Hiroyuki
Ito, Takashi
author_sort Miura, Fumihito
collection PubMed
description Next-generation sequencing of single-stranded DNA (ssDNA) is attracting increased attention from a wide variety of research fields. Accordingly, various methods are actively being tested for the efficient adaptor-tagging of ssDNA. We conceived a novel chemo-enzymatic method termed terminal deoxynucleotidyl transferase (TdT)-assisted, copper-catalyzed azide-alkyne cycloaddition (CuAAC)-mediated ssDNA ligation (TCS ligation). In this method, TdT is used to incorporate a single 3′-azide-modified dideoxyribonucleotide onto the 3′-end of target ssDNA, followed by CuAAC-mediated click ligation of the azide-incorporated 3′-end to a 5′-ethynylated synthetic adaptor. This report presents the first proof-of-principle application of TCS ligation with its use in the preparation of a next-generation sequencing library.
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spelling pubmed-61447952018-09-25 Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA Miura, Fumihito Fujino, Tomoko Kogashi, Kanako Shibata, Yukiko Miura, Miki Isobe, Hiroyuki Ito, Takashi Nucleic Acids Res Methods Online Next-generation sequencing of single-stranded DNA (ssDNA) is attracting increased attention from a wide variety of research fields. Accordingly, various methods are actively being tested for the efficient adaptor-tagging of ssDNA. We conceived a novel chemo-enzymatic method termed terminal deoxynucleotidyl transferase (TdT)-assisted, copper-catalyzed azide-alkyne cycloaddition (CuAAC)-mediated ssDNA ligation (TCS ligation). In this method, TdT is used to incorporate a single 3′-azide-modified dideoxyribonucleotide onto the 3′-end of target ssDNA, followed by CuAAC-mediated click ligation of the azide-incorporated 3′-end to a 5′-ethynylated synthetic adaptor. This report presents the first proof-of-principle application of TCS ligation with its use in the preparation of a next-generation sequencing library. Oxford University Press 2018-09-19 2018-05-26 /pmc/articles/PMC6144795/ /pubmed/29846671 http://dx.doi.org/10.1093/nar/gky452 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Methods Online
Miura, Fumihito
Fujino, Tomoko
Kogashi, Kanako
Shibata, Yukiko
Miura, Miki
Isobe, Hiroyuki
Ito, Takashi
Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA
title Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA
title_full Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA
title_fullStr Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA
title_full_unstemmed Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA
title_short Triazole linking for preparation of a next-generation sequencing library from single-stranded DNA
title_sort triazole linking for preparation of a next-generation sequencing library from single-stranded dna
topic Methods Online
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6144795/
https://www.ncbi.nlm.nih.gov/pubmed/29846671
http://dx.doi.org/10.1093/nar/gky452
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