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Stage duration distributions in matrix population models
Matrix population models are a standard tool for studying stage‐structured populations, but they are not flexible in describing stage duration distributions. This study describes a method for modeling various such distributions in matrix models. The method uses a mixture of two negative binomial dis...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6144974/ https://www.ncbi.nlm.nih.gov/pubmed/30250674 http://dx.doi.org/10.1002/ece3.4279 |
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author | Okuyama, Toshinori |
author_facet | Okuyama, Toshinori |
author_sort | Okuyama, Toshinori |
collection | PubMed |
description | Matrix population models are a standard tool for studying stage‐structured populations, but they are not flexible in describing stage duration distributions. This study describes a method for modeling various such distributions in matrix models. The method uses a mixture of two negative binomial distributions (parametrized using a maximum likelihood method) to approximate a target (true) distribution. To examine the performance of the method, populations consisting of two life stages (juvenile and adult) were considered. The juvenile duration distribution followed a gamma distribution, lognormal distribution, or zero‐truncated (over‐dispersed) Poisson distribution, each of which represents a target distribution to be approximated by a mixture distribution. The true population growth rate based on a target distribution was obtained using an individual‐based model, and the extent to which matrix models can approximate the target dynamics was examined. The results show that the method generally works well for the examined target distributions, but is prone to biased predictions under some conditions. In addition, the method works uniformly better than an existing method whose performance was also examined for comparison. Other details regarding parameter estimation and model development are also discussed. |
format | Online Article Text |
id | pubmed-6144974 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-61449742018-09-24 Stage duration distributions in matrix population models Okuyama, Toshinori Ecol Evol Original Research Matrix population models are a standard tool for studying stage‐structured populations, but they are not flexible in describing stage duration distributions. This study describes a method for modeling various such distributions in matrix models. The method uses a mixture of two negative binomial distributions (parametrized using a maximum likelihood method) to approximate a target (true) distribution. To examine the performance of the method, populations consisting of two life stages (juvenile and adult) were considered. The juvenile duration distribution followed a gamma distribution, lognormal distribution, or zero‐truncated (over‐dispersed) Poisson distribution, each of which represents a target distribution to be approximated by a mixture distribution. The true population growth rate based on a target distribution was obtained using an individual‐based model, and the extent to which matrix models can approximate the target dynamics was examined. The results show that the method generally works well for the examined target distributions, but is prone to biased predictions under some conditions. In addition, the method works uniformly better than an existing method whose performance was also examined for comparison. Other details regarding parameter estimation and model development are also discussed. John Wiley and Sons Inc. 2018-07-16 /pmc/articles/PMC6144974/ /pubmed/30250674 http://dx.doi.org/10.1002/ece3.4279 Text en © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Okuyama, Toshinori Stage duration distributions in matrix population models |
title | Stage duration distributions in matrix population models |
title_full | Stage duration distributions in matrix population models |
title_fullStr | Stage duration distributions in matrix population models |
title_full_unstemmed | Stage duration distributions in matrix population models |
title_short | Stage duration distributions in matrix population models |
title_sort | stage duration distributions in matrix population models |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6144974/ https://www.ncbi.nlm.nih.gov/pubmed/30250674 http://dx.doi.org/10.1002/ece3.4279 |
work_keys_str_mv | AT okuyamatoshinori stagedurationdistributionsinmatrixpopulationmodels |