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Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset
The ecology and distribution of green phytoplankton (Chlorophyta) in the ocean is poorly known because most studies have focused on groups with large cell size such as diatoms or dinoflagellates that are easily recognized by traditional techniques such as microscopy. The Ocean Sampling Day (OSD) pro...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6145878/ https://www.ncbi.nlm.nih.gov/pubmed/30232358 http://dx.doi.org/10.1038/s41598-018-32338-w |
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author | Tragin, Margot Vaulot, Daniel |
author_facet | Tragin, Margot Vaulot, Daniel |
author_sort | Tragin, Margot |
collection | PubMed |
description | The ecology and distribution of green phytoplankton (Chlorophyta) in the ocean is poorly known because most studies have focused on groups with large cell size such as diatoms or dinoflagellates that are easily recognized by traditional techniques such as microscopy. The Ocean Sampling Day (OSD) project sampled surface waters quasi-simultaneously at 141 marine locations, mostly in coastal waters. The analysis of the 18S V4 region OSD metabarcoding dataset reveals that Chlorophyta are ubiquitous and can be locally dominant in coastal waters. Chlorophyta represented 29% of the global photosynthetic reads (Dinoflagellates excluded) and their contribution was especially high at oligotrophic stations (up to 94%) and along the European Atlantic coast. Mamiellophyceae dominated most coastal stations. At some coastal stations, they were replaced by Chlorodendrophyceae, Ulvophyceae, Trebouxiophyceae or Chlorophyceae as the dominating group, while oligotrophic stations were dominated either by Chloropicophyceae or the uncultured prasinophytes clade IX. Several Chlorophyta classes showed preferences in terms of nitrate concentration, distance to the coast, temperature and salinity. For example, Chlorophyceae preferred cold and low salinity coastal waters, and prasinophytes clade IX warm, high salinity, oligotrophic oceanic waters. |
format | Online Article Text |
id | pubmed-6145878 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-61458782018-09-24 Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset Tragin, Margot Vaulot, Daniel Sci Rep Article The ecology and distribution of green phytoplankton (Chlorophyta) in the ocean is poorly known because most studies have focused on groups with large cell size such as diatoms or dinoflagellates that are easily recognized by traditional techniques such as microscopy. The Ocean Sampling Day (OSD) project sampled surface waters quasi-simultaneously at 141 marine locations, mostly in coastal waters. The analysis of the 18S V4 region OSD metabarcoding dataset reveals that Chlorophyta are ubiquitous and can be locally dominant in coastal waters. Chlorophyta represented 29% of the global photosynthetic reads (Dinoflagellates excluded) and their contribution was especially high at oligotrophic stations (up to 94%) and along the European Atlantic coast. Mamiellophyceae dominated most coastal stations. At some coastal stations, they were replaced by Chlorodendrophyceae, Ulvophyceae, Trebouxiophyceae or Chlorophyceae as the dominating group, while oligotrophic stations were dominated either by Chloropicophyceae or the uncultured prasinophytes clade IX. Several Chlorophyta classes showed preferences in terms of nitrate concentration, distance to the coast, temperature and salinity. For example, Chlorophyceae preferred cold and low salinity coastal waters, and prasinophytes clade IX warm, high salinity, oligotrophic oceanic waters. Nature Publishing Group UK 2018-09-19 /pmc/articles/PMC6145878/ /pubmed/30232358 http://dx.doi.org/10.1038/s41598-018-32338-w Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Tragin, Margot Vaulot, Daniel Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset |
title | Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset |
title_full | Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset |
title_fullStr | Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset |
title_full_unstemmed | Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset |
title_short | Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset |
title_sort | green microalgae in marine coastal waters: the ocean sampling day (osd) dataset |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6145878/ https://www.ncbi.nlm.nih.gov/pubmed/30232358 http://dx.doi.org/10.1038/s41598-018-32338-w |
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