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Focused scores enable reliable discrimination of small differences in steatosis
BACKGROUND: Automated image analysis enables quantitative measurement of steatosis in histological images. However, spatial heterogeneity of steatosis can make quantitative steatosis scores unreliable. To improve the reliability, we have developed novel scores that are “focused” on steatotic tissue...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6146776/ https://www.ncbi.nlm.nih.gov/pubmed/30231920 http://dx.doi.org/10.1186/s13000-018-0753-5 |
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author | Homeyer, André Hammad, Seddik Schwen, Lars Ole Dahmen, Uta Höfener, Henning Gao, Yan Dooley, Steven Schenk, Andrea |
author_facet | Homeyer, André Hammad, Seddik Schwen, Lars Ole Dahmen, Uta Höfener, Henning Gao, Yan Dooley, Steven Schenk, Andrea |
author_sort | Homeyer, André |
collection | PubMed |
description | BACKGROUND: Automated image analysis enables quantitative measurement of steatosis in histological images. However, spatial heterogeneity of steatosis can make quantitative steatosis scores unreliable. To improve the reliability, we have developed novel scores that are “focused” on steatotic tissue areas. METHODS: Focused scores use concepts of tile-based hotspot analysis in order to compute statistics about steatotic tissue areas in an objective way. We evaluated focused scores on three data sets of images of rodent liver sections exhibiting different amounts of dietary-induced steatosis. The same evaluation was conducted with the standard steatosis score computed by most image analysis methods. RESULTS: The standard score reliably discriminated large differences in steatosis (intraclass correlation coefficient ICC = 0.86), but failed to discriminate small (ICC = 0.54) and very small (ICC = 0.14) differences. With an appropriate tile size, mean-based focused scores reliably discriminated large (ICC = 0.92), small (ICC = 0.86) and very small (ICC = 0.83) differences. Focused scores based on high percentiles showed promise in further improving the discrimination of very small differences (ICC = 0.93). CONCLUSIONS: Focused scores enable reliable discrimination of small differences in steatosis in histological images. They are conceptually simple and straightforward to use in research studies. |
format | Online Article Text |
id | pubmed-6146776 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-61467762018-09-24 Focused scores enable reliable discrimination of small differences in steatosis Homeyer, André Hammad, Seddik Schwen, Lars Ole Dahmen, Uta Höfener, Henning Gao, Yan Dooley, Steven Schenk, Andrea Diagn Pathol Research BACKGROUND: Automated image analysis enables quantitative measurement of steatosis in histological images. However, spatial heterogeneity of steatosis can make quantitative steatosis scores unreliable. To improve the reliability, we have developed novel scores that are “focused” on steatotic tissue areas. METHODS: Focused scores use concepts of tile-based hotspot analysis in order to compute statistics about steatotic tissue areas in an objective way. We evaluated focused scores on three data sets of images of rodent liver sections exhibiting different amounts of dietary-induced steatosis. The same evaluation was conducted with the standard steatosis score computed by most image analysis methods. RESULTS: The standard score reliably discriminated large differences in steatosis (intraclass correlation coefficient ICC = 0.86), but failed to discriminate small (ICC = 0.54) and very small (ICC = 0.14) differences. With an appropriate tile size, mean-based focused scores reliably discriminated large (ICC = 0.92), small (ICC = 0.86) and very small (ICC = 0.83) differences. Focused scores based on high percentiles showed promise in further improving the discrimination of very small differences (ICC = 0.93). CONCLUSIONS: Focused scores enable reliable discrimination of small differences in steatosis in histological images. They are conceptually simple and straightforward to use in research studies. BioMed Central 2018-09-20 /pmc/articles/PMC6146776/ /pubmed/30231920 http://dx.doi.org/10.1186/s13000-018-0753-5 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Homeyer, André Hammad, Seddik Schwen, Lars Ole Dahmen, Uta Höfener, Henning Gao, Yan Dooley, Steven Schenk, Andrea Focused scores enable reliable discrimination of small differences in steatosis |
title | Focused scores enable reliable discrimination of small differences in steatosis |
title_full | Focused scores enable reliable discrimination of small differences in steatosis |
title_fullStr | Focused scores enable reliable discrimination of small differences in steatosis |
title_full_unstemmed | Focused scores enable reliable discrimination of small differences in steatosis |
title_short | Focused scores enable reliable discrimination of small differences in steatosis |
title_sort | focused scores enable reliable discrimination of small differences in steatosis |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6146776/ https://www.ncbi.nlm.nih.gov/pubmed/30231920 http://dx.doi.org/10.1186/s13000-018-0753-5 |
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