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Cancer Classification Based on Support Vector Machine Optimized by Particle Swarm Optimization and Artificial Bee Colony

Intelligent optimization algorithms have advantages in dealing with complex nonlinear problems accompanied by good flexibility and adaptability. In this paper, the FCBF (Fast Correlation-Based Feature selection) method is used to filter irrelevant and redundant features in order to improve the quali...

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Detalles Bibliográficos
Autores principales: Gao, Lingyun, Ye, Mingquan, Wu, Changrong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6149693/
https://www.ncbi.nlm.nih.gov/pubmed/29186052
http://dx.doi.org/10.3390/molecules22122086
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author Gao, Lingyun
Ye, Mingquan
Wu, Changrong
author_facet Gao, Lingyun
Ye, Mingquan
Wu, Changrong
author_sort Gao, Lingyun
collection PubMed
description Intelligent optimization algorithms have advantages in dealing with complex nonlinear problems accompanied by good flexibility and adaptability. In this paper, the FCBF (Fast Correlation-Based Feature selection) method is used to filter irrelevant and redundant features in order to improve the quality of cancer classification. Then, we perform classification based on SVM (Support Vector Machine) optimized by PSO (Particle Swarm Optimization) combined with ABC (Artificial Bee Colony) approaches, which is represented as PA-SVM. The proposed PA-SVM method is applied to nine cancer datasets, including five datasets of outcome prediction and a protein dataset of ovarian cancer. By comparison with other classification methods, the results demonstrate the effectiveness and the robustness of the proposed PA-SVM method in handling various types of data for cancer classification.
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spelling pubmed-61496932018-11-13 Cancer Classification Based on Support Vector Machine Optimized by Particle Swarm Optimization and Artificial Bee Colony Gao, Lingyun Ye, Mingquan Wu, Changrong Molecules Article Intelligent optimization algorithms have advantages in dealing with complex nonlinear problems accompanied by good flexibility and adaptability. In this paper, the FCBF (Fast Correlation-Based Feature selection) method is used to filter irrelevant and redundant features in order to improve the quality of cancer classification. Then, we perform classification based on SVM (Support Vector Machine) optimized by PSO (Particle Swarm Optimization) combined with ABC (Artificial Bee Colony) approaches, which is represented as PA-SVM. The proposed PA-SVM method is applied to nine cancer datasets, including five datasets of outcome prediction and a protein dataset of ovarian cancer. By comparison with other classification methods, the results demonstrate the effectiveness and the robustness of the proposed PA-SVM method in handling various types of data for cancer classification. MDPI 2017-11-29 /pmc/articles/PMC6149693/ /pubmed/29186052 http://dx.doi.org/10.3390/molecules22122086 Text en © 2017 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Gao, Lingyun
Ye, Mingquan
Wu, Changrong
Cancer Classification Based on Support Vector Machine Optimized by Particle Swarm Optimization and Artificial Bee Colony
title Cancer Classification Based on Support Vector Machine Optimized by Particle Swarm Optimization and Artificial Bee Colony
title_full Cancer Classification Based on Support Vector Machine Optimized by Particle Swarm Optimization and Artificial Bee Colony
title_fullStr Cancer Classification Based on Support Vector Machine Optimized by Particle Swarm Optimization and Artificial Bee Colony
title_full_unstemmed Cancer Classification Based on Support Vector Machine Optimized by Particle Swarm Optimization and Artificial Bee Colony
title_short Cancer Classification Based on Support Vector Machine Optimized by Particle Swarm Optimization and Artificial Bee Colony
title_sort cancer classification based on support vector machine optimized by particle swarm optimization and artificial bee colony
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6149693/
https://www.ncbi.nlm.nih.gov/pubmed/29186052
http://dx.doi.org/10.3390/molecules22122086
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AT yemingquan cancerclassificationbasedonsupportvectormachineoptimizedbyparticleswarmoptimizationandartificialbeecolony
AT wuchangrong cancerclassificationbasedonsupportvectormachineoptimizedbyparticleswarmoptimizationandartificialbeecolony