Cargando…

A Seed Expansion Graph Clustering Method for Protein Complexes Detection in Protein Interaction Networks

Most proteins perform their biological functions while interacting as complexes. The detection of protein complexes is an important task not only for understanding the relationship between functions and structures of biological network, but also for predicting the function of unknown proteins. We pr...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Jie, Zheng, Wenping, Qian, Yuhua, Liang, Jiye
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6150027/ https://www.ncbi.nlm.nih.gov/pubmed/29292776 http://dx.doi.org/10.3390/molecules22122179

Ejemplares similares

Detecting Overlapping Protein Complexes by Rough-Fuzzy Clustering in Protein-Protein Interaction Networks
por: Wu, Hao, et al.
Publicado: (2014)

Protein complex identification by supervised graph local clustering
por: Qi, Yanjun, et al.
Publicado: (2008)

DiffSLC: A graph centrality method to detect essential proteins of a protein-protein interaction network
por: Mistry, Divya, et al.
Publicado: (2017)

Pepper: cytoscape app for protein complex expansion using protein–protein interaction networks
por: Winterhalter, C., et al.
Publicado: (2014)

Global alignment of protein–protein interaction networks by graph matching methods
por: Zaslavskiy, Mikhail, et al.
Publicado: (2009)

A seed expansion-based method to identify essential proteins by integrating protein–protein interaction sub-networks and multiple biological characteristics
por: Zhao, He, et al.
Publicado: (2023)

Prediction of protein–protein interaction using graph neural networks
por: Jha, Kanchan, et al.
Publicado: (2022)

Distance indexing and seed clustering in sequence graphs
por: Chang, Xian, et al.
Publicado: (2020)

Markov clustering versus affinity propagation for the partitioning of protein interaction graphs
por: Vlasblom, James, et al.
Publicado: (2009)

Struct2Graph: a graph attention network for structure based predictions of protein–protein interactions
por: Baranwal, Mayank, et al.
Publicado: (2022)

Graph spectral analysis of protein interaction network evolution
por: Thorne, Thomas, et al.
Publicado: (2012)

A graph-based clustering method applied to protein sequences
por: Mishra, Pooja, et al.
Publicado: (2011)

A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks
por: Ou-Yang, Le, et al.
Publicado: (2017)

Predicting Protein–Protein Interactions via Gated Graph Attention Signed Network
por: Xiang, Zhijie, et al.
Publicado: (2021)

Graph Neural Network for Protein–Protein Interaction Prediction: A Comparative Study
por: Zhou, Hang, et al.
Publicado: (2022)

Detecting temporal protein complexes from dynamic protein-protein interaction networks
por: Ou-Yang, Le, et al.
Publicado: (2014)

Predicting lncRNA-protein interactions with bipartite graph embedding and deep graph neural networks
por: Ma, Yuzhou, et al.
Publicado: (2023)

Efficient and accurate identification of protein complexes from protein-protein interaction networks based on the clustering coefficient
por: Omranian, Sara, et al.
Publicado: (2021)

Graph-based prediction of Protein-protein interactions with attributed signed graph embedding
por: Yang, Fang, et al.
Publicado: (2020)

Hierarchical graph learning for protein–protein interaction
por: Gao, Ziqi, et al.
Publicado: (2023)

PLW: Probabilistic Local Walks for detecting protein complexes from protein interaction networks
por: Wong, Daniel Lin-Kit, et al.
Publicado: (2013)

Graph-based information diffusion method for prioritizing functionally related genes in protein-protein interaction networks
por: Pham, Minh, et al.
Publicado: (2020)

Protein complex detection with semi-supervised learning in protein interaction networks
por: Shi, Lei, et al.
Publicado: (2011)

An Improved Memetic Algorithm for Detecting Protein Complexes in Protein Interaction Networks
por: Wang, Rongquan, et al.
Publicado: (2021)

ClusterM: a scalable algorithm for computational prediction of conserved protein complexes across multiple protein interaction networks
por: Wang, Yijie, et al.
Publicado: (2020)

Recent advances in clustering methods for protein interaction networks
por: Wang, Jianxin, et al.
Publicado: (2010)

Identifying Hierarchical and Overlapping Protein Complexes Based on Essential Protein-Protein Interactions and “Seed-Expanding” Method
por: Ren, Jun, et al.
Publicado: (2014)

Accuracy improvement in protein complex prediction from protein interaction networks by refining cluster overlaps
por: Chiam, Tak Chien, et al.
Publicado: (2012)

Evaluation of clustering algorithms for protein-protein interaction networks
por: Brohée, Sylvain, et al.
Publicado: (2006)

Entropy-Based Graph Clustering of PPI Networks for Predicting Overlapping Functional Modules of Proteins
por: Jeong, Hoyeon, et al.
Publicado: (2021)

Graph embedding-based novel protein interaction prediction via higher-order graph convolutional network
por: Xiao, Ze, et al.
Publicado: (2020)

An inductive graph neural network model for compound–protein interaction prediction based on a homogeneous graph
por: Wan, Xiaozhe, et al.
Publicado: (2022)

Decoding the protein–ligand interactions using parallel graph neural networks
por: Knutson, Carter, et al.
Publicado: (2022)

Predicting compound-protein interaction using hierarchical graph convolutional networks
por: Bui-Thi, Danh, et al.
Publicado: (2022)

De novo prediction of RNA–protein interactions with graph neural networks
por: Arora, Viplove, et al.
Publicado: (2022)

Protein complex detection using interaction reliability assessment and weighted clustering coefficient
por: Zaki, Nazar, et al.
Publicado: (2013)

Drone Detection and Pose Estimation Using Relational Graph Networks
por: Jin, Ren, et al.
Publicado: (2019)

PIKE-R2P: Protein–protein interaction network-based knowledge embedding with graph neural network for single-cell RNA to protein prediction
por: Dai, Xinnan, et al.
Publicado: (2021)

Detecting Protein Complexes in Protein Interaction Networks Modeled as Gene Expression Biclusters
por: Hanna, Eileen Marie, et al.
Publicado: (2015)

Functional clustering of yeast proteins from the protein-protein interaction network
por: Sen, Taner Z, et al.
Publicado: (2006)

Cannot write session to /tmp/vufind_sessions/sess_q1npvl10qrjngvismb60iu6heb